Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06460

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06455 and ABZR87_RS06460 are separated by 104 nucleotidesABZR87_RS06460 and ABZR87_RS06465 are separated by 83 nucleotides ABZR87_RS06455: ABZR87_RS06455 - IclR family transcriptional regulator, at 1,374,749 to 1,375,657 _RS06455 ABZR87_RS06460: ABZR87_RS06460 - LLM class flavin-dependent oxidoreductase, at 1,375,762 to 1,376,766 _RS06460 ABZR87_RS06465: ABZR87_RS06465 - ABC transporter substrate-binding protein, at 1,376,850 to 1,378,013 _RS06465 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1374.829 kb on - strandat 1374.845 kb on + strand, within ABZR87_RS06455at 1374.846 kb on - strand, within ABZR87_RS06455at 1375.453 kb on - strand, within ABZR87_RS06455at 1375.682 kb on + strandat 1375.694 kb on + strandat 1375.698 kb on + strandat 1375.699 kb on - strandat 1375.796 kb on - strandat 1375.828 kb on + strandat 1375.828 kb on + strandat 1375.828 kb on + strandat 1375.829 kb on - strandat 1375.829 kb on - strandat 1375.829 kb on - strandat 1375.874 kb on - strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.117 kb on - strand, within ABZR87_RS06460at 1376.305 kb on + strand, within ABZR87_RS06460at 1376.305 kb on + strand, within ABZR87_RS06460at 1376.306 kb on - strand, within ABZR87_RS06460at 1376.347 kb on + strand, within ABZR87_RS06460at 1376.348 kb on - strand, within ABZR87_RS06460at 1376.395 kb on + strand, within ABZR87_RS06460at 1376.396 kb on - strand, within ABZR87_RS06460at 1376.396 kb on - strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.540 kb on - strand, within ABZR87_RS06460at 1376.557 kb on + strand, within ABZR87_RS06460at 1376.558 kb on - strand, within ABZR87_RS06460at 1376.558 kb on - strand, within ABZR87_RS06460at 1376.815 kb on + strandat 1376.881 kb on + strandat 1376.881 kb on + strandat 1377.146 kb on + strand, within ABZR87_RS06465at 1377.146 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.573 kb on + strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.589 kb on + strand, within ABZR87_RS06465at 1377.590 kb on - strand, within ABZR87_RS06465at 1377.590 kb on - strand, within ABZR87_RS06465at 1377.639 kb on + strand, within ABZR87_RS06465at 1377.639 kb on + strand, within ABZR87_RS06465at 1377.640 kb on - strand, within ABZR87_RS06465at 1377.640 kb on - strand, within ABZR87_RS06465at 1377.726 kb on + strand, within ABZR87_RS06465at 1377.727 kb on - strand, within ABZR87_RS06465

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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1,374,829 - -1.4
1,374,845 + ABZR87_RS06455 0.11 -4.1
1,374,846 - ABZR87_RS06455 0.11 -0.4
1,375,453 - ABZR87_RS06455 0.77 +0.1
1,375,682 + -2.3
1,375,694 + -1.9
1,375,698 + -0.6
1,375,699 - +1.5
1,375,796 - +0.2
1,375,828 + +0.4
1,375,828 + -1.1
1,375,828 + -0.3
1,375,829 - -0.6
1,375,829 - +0.1
1,375,829 - +0.3
1,375,874 - ABZR87_RS06460 0.11 +0.4
1,376,035 + ABZR87_RS06460 0.27 +1.2
1,376,035 + ABZR87_RS06460 0.27 -3.1
1,376,035 + ABZR87_RS06460 0.27 -3.0
1,376,035 + ABZR87_RS06460 0.27 -3.3
1,376,035 + ABZR87_RS06460 0.27 -3.7
1,376,035 + ABZR87_RS06460 0.27 -1.0
1,376,035 + ABZR87_RS06460 0.27 -0.3
1,376,035 + ABZR87_RS06460 0.27 +0.2
1,376,035 + ABZR87_RS06460 0.27 -2.5
1,376,035 + ABZR87_RS06460 0.27 -0.1
1,376,036 - ABZR87_RS06460 0.27 +0.6
1,376,036 - ABZR87_RS06460 0.27 -4.2
1,376,036 - ABZR87_RS06460 0.27 +1.8
1,376,036 - ABZR87_RS06460 0.27 -0.4
1,376,036 - ABZR87_RS06460 0.27 +4.4
1,376,036 - ABZR87_RS06460 0.27 +0.7
1,376,036 - ABZR87_RS06460 0.27 -3.2
1,376,036 - ABZR87_RS06460 0.27 -0.8
1,376,036 - ABZR87_RS06460 0.27 +0.9
1,376,036 - ABZR87_RS06460 0.27 -0.5
1,376,116 + ABZR87_RS06460 0.35 -2.4
1,376,116 + ABZR87_RS06460 0.35 -1.3
1,376,116 + ABZR87_RS06460 0.35 +0.8
1,376,117 - ABZR87_RS06460 0.35 +3.1
1,376,305 + ABZR87_RS06460 0.54 -2.2
1,376,305 + ABZR87_RS06460 0.54 +0.1
1,376,306 - ABZR87_RS06460 0.54 +1.0
1,376,347 + ABZR87_RS06460 0.58 -2.9
1,376,348 - ABZR87_RS06460 0.58 -3.1
1,376,395 + ABZR87_RS06460 0.63 -0.2
1,376,396 - ABZR87_RS06460 0.63 -1.9
1,376,396 - ABZR87_RS06460 0.63 -0.7
1,376,521 + ABZR87_RS06460 0.76 +1.2
1,376,521 + ABZR87_RS06460 0.76 -2.6
1,376,521 + ABZR87_RS06460 0.76 +0.6
1,376,521 + ABZR87_RS06460 0.76 +2.1
1,376,521 + ABZR87_RS06460 0.76 -2.3
1,376,521 + ABZR87_RS06460 0.76 -1.0
1,376,521 + ABZR87_RS06460 0.76 -0.1
1,376,521 + ABZR87_RS06460 0.76 -1.8
1,376,522 - ABZR87_RS06460 0.76 -3.7
1,376,522 - ABZR87_RS06460 0.76 -2.0
1,376,522 - ABZR87_RS06460 0.76 +1.4
1,376,522 - ABZR87_RS06460 0.76 -1.1
1,376,522 - ABZR87_RS06460 0.76 -1.0
1,376,522 - ABZR87_RS06460 0.76 -1.3
1,376,522 - ABZR87_RS06460 0.76 +1.4
1,376,539 + ABZR87_RS06460 0.77 -3.8
1,376,539 + ABZR87_RS06460 0.77 -2.0
1,376,539 + ABZR87_RS06460 0.77 +1.6
1,376,539 + ABZR87_RS06460 0.77 +0.8
1,376,540 - ABZR87_RS06460 0.77 -0.8
1,376,557 + ABZR87_RS06460 0.79 +0.3
1,376,558 - ABZR87_RS06460 0.79 -1.9
1,376,558 - ABZR87_RS06460 0.79 -0.8
1,376,815 + +1.2
1,376,881 + -0.1
1,376,881 + -3.6
1,377,146 + ABZR87_RS06465 0.25 -2.6
1,377,146 + ABZR87_RS06465 0.25 +0.6
1,377,333 + ABZR87_RS06465 0.41 +0.5
1,377,333 + ABZR87_RS06465 0.41 -0.8
1,377,333 + ABZR87_RS06465 0.41 +0.3
1,377,333 + ABZR87_RS06465 0.41 +1.8
1,377,333 + ABZR87_RS06465 0.41 +1.8
1,377,333 + ABZR87_RS06465 0.41 +1.9
1,377,333 + ABZR87_RS06465 0.41 +0.2
1,377,334 - ABZR87_RS06465 0.42 -0.3
1,377,334 - ABZR87_RS06465 0.42 +1.0
1,377,334 - ABZR87_RS06465 0.42 +1.1
1,377,334 - ABZR87_RS06465 0.42 +0.5
1,377,334 - ABZR87_RS06465 0.42 -3.6
1,377,558 + ABZR87_RS06465 0.61 +0.4
1,377,558 + ABZR87_RS06465 0.61 -0.4
1,377,558 + ABZR87_RS06465 0.61 +0.2
1,377,573 + ABZR87_RS06465 0.62 -2.3
1,377,574 - ABZR87_RS06465 0.62 -1.3
1,377,574 - ABZR87_RS06465 0.62 +1.7
1,377,574 - ABZR87_RS06465 0.62 +0.7
1,377,574 - ABZR87_RS06465 0.62 +4.1
1,377,589 + ABZR87_RS06465 0.63 +0.5
1,377,590 - ABZR87_RS06465 0.64 +1.0
1,377,590 - ABZR87_RS06465 0.64 +1.0
1,377,639 + ABZR87_RS06465 0.68 +1.2
1,377,639 + ABZR87_RS06465 0.68 -2.1
1,377,640 - ABZR87_RS06465 0.68 -0.3
1,377,640 - ABZR87_RS06465 0.68 +0.3
1,377,726 + ABZR87_RS06465 0.75 -0.5
1,377,727 - ABZR87_RS06465 0.75 -1.7

Or see this region's nucleotide sequence