Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04720 and ABZR87_RS04725 are separated by 42 nucleotides ABZR87_RS04725 and ABZR87_RS04730 are separated by 184 nucleotides ABZR87_RS04730 and ABZR87_RS04735 are separated by 109 nucleotides
ABZR87_RS04720: ABZR87_RS04720 - IclR family transcriptional regulator, at 984,594 to 985,391
_RS04720
ABZR87_RS04725: ABZR87_RS04725 - universal stress protein, at 985,434 to 985,868
_RS04725
ABZR87_RS04730: ABZR87_RS04730 - thioesterase family protein, at 986,053 to 986,496
_RS04730
ABZR87_RS04735: ABZR87_RS04735 - hypothetical protein, at 986,606 to 986,827
_RS04735
Position (kb) 985
986 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 984.465 kb on + strand at 984.465 kb on + strand at 984.465 kb on + strand at 984.465 kb on + strand at 984.465 kb on + strand at 984.465 kb on + strand at 984.465 kb on + strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.466 kb on - strand at 984.495 kb on + strand at 984.510 kb on + strand at 984.510 kb on + strand at 984.511 kb on - strand at 984.515 kb on - strand at 984.528 kb on - strand at 984.536 kb on + strand at 984.536 kb on + strand at 984.536 kb on + strand at 984.537 kb on - strand at 984.538 kb on + strand at 984.538 kb on + strand at 984.539 kb on - strand at 984.762 kb on + strand, within ABZR87_RS04720 at 984.762 kb on + strand, within ABZR87_RS04720 at 984.762 kb on + strand, within ABZR87_RS04720 at 984.763 kb on - strand, within ABZR87_RS04720 at 984.763 kb on - strand, within ABZR87_RS04720 at 984.763 kb on - strand, within ABZR87_RS04720 at 984.763 kb on - strand, within ABZR87_RS04720 at 984.784 kb on - strand, within ABZR87_RS04720 at 984.852 kb on + strand, within ABZR87_RS04720 at 984.852 kb on + strand, within ABZR87_RS04720 at 984.852 kb on + strand, within ABZR87_RS04720 at 984.852 kb on + strand, within ABZR87_RS04720 at 984.853 kb on - strand, within ABZR87_RS04720 at 984.853 kb on - strand, within ABZR87_RS04720 at 984.853 kb on - strand, within ABZR87_RS04720 at 984.853 kb on - strand, within ABZR87_RS04720 at 984.963 kb on + strand, within ABZR87_RS04720 at 984.963 kb on + strand, within ABZR87_RS04720 at 984.963 kb on + strand, within ABZR87_RS04720 at 984.963 kb on + strand, within ABZR87_RS04720 at 984.963 kb on + strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 984.964 kb on - strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.032 kb on + strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.033 kb on - strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.056 kb on + strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.057 kb on - strand, within ABZR87_RS04720 at 985.188 kb on + strand, within ABZR87_RS04720 at 985.189 kb on - strand, within ABZR87_RS04720 at 985.250 kb on + strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.251 kb on - strand, within ABZR87_RS04720 at 985.693 kb on + strand, within ABZR87_RS04725 at 985.694 kb on - strand, within ABZR87_RS04725 at 985.715 kb on + strand, within ABZR87_RS04725 at 985.831 kb on + strand at 985.832 kb on - strand at 985.854 kb on + strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.855 kb on - strand at 985.929 kb on + strand at 985.930 kb on - strand at 985.930 kb on - strand at 985.956 kb on + strand at 985.957 kb on - strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.968 kb on + strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 985.969 kb on - strand at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.161 kb on + strand, within ABZR87_RS04730 at 986.162 kb on - strand, within ABZR87_RS04730 at 986.162 kb on - strand, within ABZR87_RS04730 at 986.387 kb on + strand, within ABZR87_RS04730 at 986.387 kb on + strand, within ABZR87_RS04730 at 986.430 kb on + strand, within ABZR87_RS04730 at 986.430 kb on + strand, within ABZR87_RS04730 at 986.431 kb on - strand, within ABZR87_RS04730 at 986.506 kb on + strand at 986.507 kb on - strand at 986.507 kb on - strand at 986.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 984,465 + -1.6 984,465 + -0.3 984,465 + -2.1 984,465 + -0.1 984,465 + -1.4 984,465 + +1.9 984,465 + -0.7 984,466 - -3.1 984,466 - -3.0 984,466 - -3.9 984,466 - -1.7 984,466 - -3.4 984,466 - -0.9 984,466 - -1.0 984,466 - -1.0 984,495 + -2.5 984,510 + -0.2 984,510 + +0.4 984,511 - -2.9 984,515 - -2.7 984,528 - -3.1 984,536 + +0.7 984,536 + +1.4 984,536 + -0.1 984,537 - -3.3 984,538 + +0.3 984,538 + +1.1 984,539 - -3.5 984,762 + ABZR87_RS04720 0.21 -0.2 984,762 + ABZR87_RS04720 0.21 +2.7 984,762 + ABZR87_RS04720 0.21 +0.8 984,763 - ABZR87_RS04720 0.21 -4.1 984,763 - ABZR87_RS04720 0.21 -4.3 984,763 - ABZR87_RS04720 0.21 -3.9 984,763 - ABZR87_RS04720 0.21 -2.6 984,784 - ABZR87_RS04720 0.24 -0.2 984,852 + ABZR87_RS04720 0.32 -3.5 984,852 + ABZR87_RS04720 0.32 -0.3 984,852 + ABZR87_RS04720 0.32 -0.8 984,852 + ABZR87_RS04720 0.32 -3.5 984,853 - ABZR87_RS04720 0.32 -1.3 984,853 - ABZR87_RS04720 0.32 -5.6 984,853 - ABZR87_RS04720 0.32 -1.3 984,853 - ABZR87_RS04720 0.32 -3.6 984,963 + ABZR87_RS04720 0.46 -3.5 984,963 + ABZR87_RS04720 0.46 -1.5 984,963 + ABZR87_RS04720 0.46 -3.8 984,963 + ABZR87_RS04720 0.46 -4.2 984,963 + ABZR87_RS04720 0.46 -2.8 984,964 - ABZR87_RS04720 0.46 -4.2 984,964 - ABZR87_RS04720 0.46 -0.5 984,964 - ABZR87_RS04720 0.46 -2.5 984,964 - ABZR87_RS04720 0.46 -2.4 984,964 - ABZR87_RS04720 0.46 -4.3 984,964 - ABZR87_RS04720 0.46 -4.8 985,032 + ABZR87_RS04720 0.55 -4.0 985,032 + ABZR87_RS04720 0.55 -3.6 985,032 + ABZR87_RS04720 0.55 -4.2 985,032 + ABZR87_RS04720 0.55 -1.1 985,032 + ABZR87_RS04720 0.55 +1.1 985,032 + ABZR87_RS04720 0.55 +0.2 985,032 + ABZR87_RS04720 0.55 -2.5 985,033 - ABZR87_RS04720 0.55 -0.1 985,033 - ABZR87_RS04720 0.55 -2.7 985,033 - ABZR87_RS04720 0.55 -3.3 985,033 - ABZR87_RS04720 0.55 -3.5 985,033 - ABZR87_RS04720 0.55 -3.1 985,033 - ABZR87_RS04720 0.55 -3.0 985,056 + ABZR87_RS04720 0.58 -2.7 985,056 + ABZR87_RS04720 0.58 -3.2 985,056 + ABZR87_RS04720 0.58 -1.9 985,056 + ABZR87_RS04720 0.58 -4.3 985,056 + ABZR87_RS04720 0.58 -2.6 985,056 + ABZR87_RS04720 0.58 -3.2 985,057 - ABZR87_RS04720 0.58 -5.3 985,057 - ABZR87_RS04720 0.58 -4.6 985,057 - ABZR87_RS04720 0.58 +1.2 985,057 - ABZR87_RS04720 0.58 -3.9 985,057 - ABZR87_RS04720 0.58 -4.1 985,057 - ABZR87_RS04720 0.58 -1.8 985,188 + ABZR87_RS04720 0.74 -4.4 985,189 - ABZR87_RS04720 0.75 -3.6 985,250 + ABZR87_RS04720 0.82 +0.1 985,251 - ABZR87_RS04720 0.82 -3.8 985,251 - ABZR87_RS04720 0.82 -3.3 985,251 - ABZR87_RS04720 0.82 -3.8 985,693 + ABZR87_RS04725 0.60 -1.1 985,694 - ABZR87_RS04725 0.60 +3.1 985,715 + ABZR87_RS04725 0.65 -3.1 985,831 + +1.8 985,832 - +0.4 985,854 + -1.5 985,855 - +0.3 985,855 - +1.1 985,855 - +0.6 985,855 - +1.2 985,929 + +0.5 985,930 - +0.7 985,930 - -4.3 985,956 + -0.9 985,957 - -0.8 985,968 + +0.3 985,968 + +0.1 985,968 + +1.2 985,968 + +0.1 985,968 + +1.2 985,969 - -1.1 985,969 - +0.1 985,969 - -0.8 985,969 - +0.9 985,969 - +1.8 985,969 - -1.6 985,969 - -0.8 986,161 + ABZR87_RS04730 0.24 +0.2 986,161 + ABZR87_RS04730 0.24 +1.9 986,161 + ABZR87_RS04730 0.24 +1.5 986,161 + ABZR87_RS04730 0.24 -0.3 986,162 - ABZR87_RS04730 0.25 -0.7 986,162 - ABZR87_RS04730 0.25 +0.5 986,387 + ABZR87_RS04730 0.75 +0.2 986,387 + ABZR87_RS04730 0.75 +0.8 986,430 + ABZR87_RS04730 0.85 -0.1 986,430 + ABZR87_RS04730 0.85 -4.3 986,431 - ABZR87_RS04730 0.85 +0.7 986,506 + +0.9 986,507 - -1.6 986,507 - +1.6 986,507 - -3.1
Or see this region's nucleotide sequence