Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04610 and ABZR87_RS04615 are separated by 325 nucleotides ABZR87_RS04615 and ABZR87_RS04620 are separated by 225 nucleotides
ABZR87_RS04610: ABZR87_RS04610 - DNA damage-inducible protein D, at 963,875 to 964,744
_RS04610
ABZR87_RS04615: ABZR87_RS04615 - Rrf2 family transcriptional regulator, at 965,070 to 965,543
_RS04615
ABZR87_RS04620: ABZR87_RS04620 - globin domain-containing protein, at 965,769 to 966,974
_RS04620
Position (kb) 965
966 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 964.218 kb on + strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610 at 964.219 kb on - strand, within ABZR87_RS04610 at 964.242 kb on + strand, within ABZR87_RS04610 at 964.242 kb on + strand, within ABZR87_RS04610 at 964.395 kb on - strand, within ABZR87_RS04610 at 964.404 kb on + strand, within ABZR87_RS04610 at 964.461 kb on + strand, within ABZR87_RS04610 at 964.461 kb on + strand, within ABZR87_RS04610 at 964.461 kb on + strand, within ABZR87_RS04610 at 964.462 kb on - strand, within ABZR87_RS04610 at 964.462 kb on - strand, within ABZR87_RS04610 at 964.470 kb on + strand, within ABZR87_RS04610 at 964.629 kb on + strand, within ABZR87_RS04610 at 964.630 kb on - strand, within ABZR87_RS04610 at 964.630 kb on - strand, within ABZR87_RS04610 at 964.630 kb on - strand, within ABZR87_RS04610 at 964.712 kb on + strand at 964.712 kb on + strand at 964.712 kb on + strand at 964.712 kb on + strand at 964.712 kb on + strand at 964.712 kb on + strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.713 kb on - strand at 964.758 kb on + strand at 964.758 kb on + strand at 964.759 kb on - strand at 964.838 kb on + strand at 964.838 kb on + strand at 964.839 kb on - strand at 964.915 kb on + strand at 965.017 kb on + strand at 965.017 kb on + strand at 965.018 kb on - strand at 965.018 kb on - strand at 965.018 kb on - strand at 965.018 kb on - strand at 965.033 kb on + strand at 965.033 kb on + strand at 965.034 kb on - strand at 965.034 kb on - strand at 965.034 kb on - strand at 965.168 kb on + strand, within ABZR87_RS04615 at 965.168 kb on + strand, within ABZR87_RS04615 at 965.169 kb on - strand, within ABZR87_RS04615 at 965.169 kb on - strand, within ABZR87_RS04615 at 965.170 kb on + strand, within ABZR87_RS04615 at 965.171 kb on - strand, within ABZR87_RS04615 at 965.171 kb on - strand, within ABZR87_RS04615 at 965.192 kb on - strand, within ABZR87_RS04615 at 965.192 kb on - strand, within ABZR87_RS04615 at 965.497 kb on + strand at 965.497 kb on + strand at 965.497 kb on + strand at 965.497 kb on + strand at 965.497 kb on + strand at 965.498 kb on - strand at 965.498 kb on - strand at 965.498 kb on - strand at 965.498 kb on - strand at 965.519 kb on - strand at 965.527 kb on + strand at 965.563 kb on + strand at 965.564 kb on - strand at 965.564 kb on - strand at 965.564 kb on - strand at 965.653 kb on - strand at 965.732 kb on + strand at 965.754 kb on + strand at 965.754 kb on + strand at 965.793 kb on + strand at 965.793 kb on + strand at 965.853 kb on + strand at 965.853 kb on + strand at 965.853 kb on + strand at 965.853 kb on + strand at 965.854 kb on - strand at 965.959 kb on - strand, within ABZR87_RS04620 at 965.959 kb on - strand, within ABZR87_RS04620 at 965.959 kb on - strand, within ABZR87_RS04620 at 966.051 kb on + strand, within ABZR87_RS04620 at 966.145 kb on - strand, within ABZR87_RS04620 at 966.189 kb on + strand, within ABZR87_RS04620 at 966.190 kb on - strand, within ABZR87_RS04620 at 966.195 kb on + strand, within ABZR87_RS04620 at 966.196 kb on - strand, within ABZR87_RS04620 at 966.196 kb on - strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.327 kb on + strand, within ABZR87_RS04620 at 966.328 kb on - strand, within ABZR87_RS04620 at 966.378 kb on + strand, within ABZR87_RS04620 at 966.379 kb on - strand, within ABZR87_RS04620 at 966.379 kb on - strand, within ABZR87_RS04620
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 964,218 + ABZR87_RS04610 0.39 -0.5 964,219 - ABZR87_RS04610 0.40 +0.1 964,219 - ABZR87_RS04610 0.40 +1.2 964,219 - ABZR87_RS04610 0.40 +0.5 964,242 + ABZR87_RS04610 0.42 -3.1 964,242 + ABZR87_RS04610 0.42 +0.3 964,395 - ABZR87_RS04610 0.60 +0.6 964,404 + ABZR87_RS04610 0.61 -2.4 964,461 + ABZR87_RS04610 0.67 +1.5 964,461 + ABZR87_RS04610 0.67 -3.2 964,461 + ABZR87_RS04610 0.67 +1.5 964,462 - ABZR87_RS04610 0.67 +1.1 964,462 - ABZR87_RS04610 0.67 -0.4 964,470 + ABZR87_RS04610 0.68 -2.9 964,629 + ABZR87_RS04610 0.87 -2.1 964,630 - ABZR87_RS04610 0.87 -2.8 964,630 - ABZR87_RS04610 0.87 +2.0 964,630 - ABZR87_RS04610 0.87 +0.3 964,712 + -2.7 964,712 + -2.0 964,712 + +0.6 964,712 + -0.5 964,712 + +0.7 964,712 + -2.1 964,713 - +0.1 964,713 - +1.8 964,713 - +0.6 964,713 - +0.3 964,713 - +0.1 964,713 - +3.5 964,713 - +0.8 964,713 - +3.3 964,713 - -1.6 964,713 - -5.1 964,713 - +0.2 964,758 + +0.5 964,758 + -1.8 964,759 - -0.6 964,838 + +1.4 964,838 + +0.4 964,839 - +0.9 964,915 + -4.5 965,017 + -2.3 965,017 + -3.3 965,018 - +0.8 965,018 - -3.4 965,018 - -0.4 965,018 - +0.9 965,033 + +0.4 965,033 + +0.5 965,034 - -4.2 965,034 - -3.2 965,034 - -1.8 965,168 + ABZR87_RS04615 0.21 -0.5 965,168 + ABZR87_RS04615 0.21 -2.4 965,169 - ABZR87_RS04615 0.21 -2.2 965,169 - ABZR87_RS04615 0.21 -0.9 965,170 + ABZR87_RS04615 0.21 -2.0 965,171 - ABZR87_RS04615 0.21 -2.4 965,171 - ABZR87_RS04615 0.21 -1.7 965,192 - ABZR87_RS04615 0.26 +0.8 965,192 - ABZR87_RS04615 0.26 -0.2 965,497 + -1.0 965,497 + -1.1 965,497 + -1.6 965,497 + -2.8 965,497 + +0.8 965,498 - -3.1 965,498 - +1.3 965,498 - +0.7 965,498 - +1.1 965,519 - +0.3 965,527 + +2.4 965,563 + -0.3 965,564 - -0.2 965,564 - +0.4 965,564 - +0.7 965,653 - +1.6 965,732 + -0.5 965,754 + +1.0 965,754 + +1.0 965,793 + +0.7 965,793 + +0.7 965,853 + -1.3 965,853 + +1.3 965,853 + -0.8 965,853 + -1.5 965,854 - -0.2 965,959 - ABZR87_RS04620 0.16 +1.3 965,959 - ABZR87_RS04620 0.16 -4.3 965,959 - ABZR87_RS04620 0.16 -0.9 966,051 + ABZR87_RS04620 0.23 +1.0 966,145 - ABZR87_RS04620 0.31 +0.5 966,189 + ABZR87_RS04620 0.35 -4.3 966,190 - ABZR87_RS04620 0.35 -3.5 966,195 + ABZR87_RS04620 0.35 -1.5 966,196 - ABZR87_RS04620 0.35 -2.1 966,196 - ABZR87_RS04620 0.35 +1.2 966,327 + ABZR87_RS04620 0.46 -0.3 966,327 + ABZR87_RS04620 0.46 +1.2 966,327 + ABZR87_RS04620 0.46 +0.1 966,327 + ABZR87_RS04620 0.46 -1.0 966,327 + ABZR87_RS04620 0.46 +0.5 966,327 + ABZR87_RS04620 0.46 -1.9 966,327 + ABZR87_RS04620 0.46 +0.9 966,328 - ABZR87_RS04620 0.46 +0.1 966,378 + ABZR87_RS04620 0.50 -3.5 966,379 - ABZR87_RS04620 0.51 -0.3 966,379 - ABZR87_RS04620 0.51 +1.0
Or see this region's nucleotide sequence