Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04510 and ABZR87_RS04515 are separated by 158 nucleotides ABZR87_RS04515 and ABZR87_RS04520 are separated by 15 nucleotides
ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851
_RS04510
ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235
_RS04515
ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874
_RS04520
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.331 kb on - strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.546 kb on + strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.616 kb on - strand, within ABZR87_RS04510 at 940.801 kb on + strand at 940.801 kb on + strand at 940.801 kb on + strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.870 kb on - strand at 940.907 kb on + strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.915 kb on + strand at 940.915 kb on + strand at 940.916 kb on - strand at 940.983 kb on - strand at 940.994 kb on + strand at 940.995 kb on - strand at 941.009 kb on + strand at 941.009 kb on + strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.015 kb on + strand at 941.082 kb on - strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.088 kb on - strand at 941.126 kb on + strand at 941.126 kb on + strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.210 kb on + strand at 941.211 kb on - strand at 941.268 kb on + strand, within ABZR87_RS04515 at 941.269 kb on - strand, within ABZR87_RS04515 at 941.874 kb on + strand, within ABZR87_RS04515 at 941.874 kb on + strand, within ABZR87_RS04515 at 941.924 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 943.107 kb on + strand at 943.155 kb on + strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.233 kb on + strand at 943.233 kb on + strand at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.368 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.495 kb on - strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.571 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.826 kb on + strand at 943.826 kb on + strand at 943.826 kb on + strand at 943.827 kb on - strand at 943.979 kb on + strand at 944.222 kb on + strand at 944.222 kb on + strand at 944.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 940,330 + ABZR87_RS04510 0.71 -2.9 940,330 + ABZR87_RS04510 0.71 +0.4 940,330 + ABZR87_RS04510 0.71 -2.9 940,330 + ABZR87_RS04510 0.71 +1.3 940,331 - ABZR87_RS04510 0.71 -2.9 940,374 + ABZR87_RS04510 0.73 -0.8 940,374 + ABZR87_RS04510 0.73 -0.8 940,385 - ABZR87_RS04510 0.74 -1.9 940,385 - ABZR87_RS04510 0.74 -0.4 940,546 + ABZR87_RS04510 0.83 -0.0 940,547 - ABZR87_RS04510 0.83 -2.1 940,547 - ABZR87_RS04510 0.83 +1.6 940,547 - ABZR87_RS04510 0.83 -3.4 940,615 + ABZR87_RS04510 0.87 +1.5 940,615 + ABZR87_RS04510 0.87 -2.9 940,616 - ABZR87_RS04510 0.87 -0.1 940,801 + -0.1 940,801 + -2.6 940,801 + -0.2 940,802 - -0.9 940,802 - -1.1 940,802 - -0.1 940,802 - +0.0 940,802 - +0.7 940,870 - +0.3 940,907 + -2.5 940,908 - -2.8 940,908 - +0.9 940,908 - +0.6 940,915 + -2.3 940,915 + +0.7 940,916 - +0.5 940,983 - +0.8 940,994 + -0.4 940,995 - -0.7 941,009 + -3.9 941,009 + +0.4 941,010 - +1.0 941,010 - -3.9 941,010 - -0.7 941,010 - +3.1 941,010 - +0.8 941,015 + -3.2 941,082 - +1.4 941,087 + +0.4 941,087 + +1.3 941,087 + -1.1 941,088 - +0.2 941,126 + -3.5 941,126 + +0.6 941,127 - -1.0 941,127 - +0.4 941,127 - -1.6 941,210 + +0.7 941,211 - -0.4 941,268 + ABZR87_RS04515 0.12 +1.5 941,269 - ABZR87_RS04515 0.12 +2.4 941,874 + ABZR87_RS04515 0.39 -3.2 941,874 + ABZR87_RS04515 0.39 -2.5 941,924 + ABZR87_RS04515 0.41 +0.4 942,294 + ABZR87_RS04515 0.58 -1.5 942,294 + ABZR87_RS04515 0.58 +0.8 942,294 + ABZR87_RS04515 0.58 +2.1 942,294 + ABZR87_RS04515 0.58 +0.8 942,294 + ABZR87_RS04515 0.58 -2.0 942,295 - ABZR87_RS04515 0.58 -2.8 942,295 - ABZR87_RS04515 0.58 -2.7 942,295 - ABZR87_RS04515 0.58 +0.4 942,295 - ABZR87_RS04515 0.58 -1.4 942,295 - ABZR87_RS04515 0.58 +2.0 942,342 + ABZR87_RS04515 0.60 -1.4 942,342 + ABZR87_RS04515 0.60 -2.5 942,342 + ABZR87_RS04515 0.60 +0.6 942,343 - ABZR87_RS04515 0.60 -2.9 942,343 - ABZR87_RS04515 0.60 +0.5 942,945 + ABZR87_RS04515 0.87 +0.3 942,945 + ABZR87_RS04515 0.87 -3.6 942,945 + ABZR87_RS04515 0.87 -0.0 942,981 + ABZR87_RS04515 0.89 -2.6 942,981 + ABZR87_RS04515 0.89 -0.0 943,107 + -2.2 943,155 + +2.0 943,156 - +0.3 943,156 - -1.5 943,156 - +2.1 943,233 + -2.5 943,233 + -2.2 943,333 + ABZR87_RS04520 0.13 -0.3 943,333 + ABZR87_RS04520 0.13 -3.3 943,333 + ABZR87_RS04520 0.13 +1.6 943,368 + ABZR87_RS04520 0.19 +0.5 943,494 + ABZR87_RS04520 0.39 -3.0 943,494 + ABZR87_RS04520 0.39 -1.4 943,494 + ABZR87_RS04520 0.39 +0.8 943,495 - ABZR87_RS04520 0.39 -0.6 943,533 + ABZR87_RS04520 0.45 -3.1 943,533 + ABZR87_RS04520 0.45 +0.4 943,533 + ABZR87_RS04520 0.45 -1.1 943,534 - ABZR87_RS04520 0.45 +1.4 943,534 - ABZR87_RS04520 0.45 -2.1 943,571 + ABZR87_RS04520 0.51 +0.7 943,700 + ABZR87_RS04520 0.72 +0.3 943,700 + ABZR87_RS04520 0.72 +0.5 943,701 - ABZR87_RS04520 0.72 -0.6 943,701 - ABZR87_RS04520 0.72 +1.7 943,720 - ABZR87_RS04520 0.75 -0.1 943,720 - ABZR87_RS04520 0.75 -3.2 943,826 + +1.3 943,826 + +0.1 943,826 + +2.1 943,827 - -0.2 943,979 + -3.7 944,222 + +0.1 944,222 + -2.5 944,223 - +2.0
Or see this region's nucleotide sequence