Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04235

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04225 and ABZR87_RS04230 are separated by 75 nucleotidesABZR87_RS04230 and ABZR87_RS04235 overlap by 4 nucleotidesABZR87_RS04235 and ABZR87_RS04240 are separated by 145 nucleotidesABZR87_RS04240 and ABZR87_RS04245 are separated by 65 nucleotides ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114 _RS04225 ABZR87_RS04230: ABZR87_RS04230 - Cu(I)-responsive transcriptional regulator, at 884,190 to 884,648 _RS04230 ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867 _RS04235 ABZR87_RS04240: ABZR87_RS04240 - heavy-metal-associated domain-containing protein, at 887,013 to 887,225 _RS04240 ABZR87_RS04245: ABZR87_RS04245 - OmpW family protein, at 887,291 to 888,019 _RS04245 Position (kb) 884 885 886 887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 883.827 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 884.149 kb on + strandat 884.150 kb on - strandat 884.150 kb on - strandat 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.561 kb on - strand, within ABZR87_RS04230at 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 885.357 kb on - strand, within ABZR87_RS04235at 885.357 kb on - strand, within ABZR87_RS04235at 885.444 kb on + strand, within ABZR87_RS04235at 885.445 kb on - strand, within ABZR87_RS04235at 885.445 kb on - strand, within ABZR87_RS04235at 885.571 kb on + strand, within ABZR87_RS04235at 885.571 kb on + strand, within ABZR87_RS04235at 885.572 kb on - strand, within ABZR87_RS04235at 885.893 kb on + strand, within ABZR87_RS04235at 885.893 kb on + strand, within ABZR87_RS04235at 885.893 kb on + strand, within ABZR87_RS04235at 885.894 kb on - strand, within ABZR87_RS04235at 885.894 kb on - strand, within ABZR87_RS04235at 885.894 kb on - strand, within ABZR87_RS04235at 886.144 kb on + strand, within ABZR87_RS04235at 886.156 kb on + strand, within ABZR87_RS04235at 886.156 kb on + strand, within ABZR87_RS04235at 886.156 kb on + strand, within ABZR87_RS04235at 886.156 kb on + strand, within ABZR87_RS04235at 886.299 kb on + strand, within ABZR87_RS04235at 886.299 kb on + strand, within ABZR87_RS04235at 886.300 kb on - strand, within ABZR87_RS04235at 886.300 kb on - strand, within ABZR87_RS04235at 886.366 kb on - strand, within ABZR87_RS04235at 886.366 kb on - strand, within ABZR87_RS04235at 886.366 kb on - strand, within ABZR87_RS04235at 886.402 kb on + strand, within ABZR87_RS04235at 886.402 kb on + strand, within ABZR87_RS04235at 886.403 kb on - strand, within ABZR87_RS04235at 886.443 kb on + strand, within ABZR87_RS04235at 886.443 kb on + strand, within ABZR87_RS04235at 886.444 kb on - strand, within ABZR87_RS04235at 886.659 kb on + strandat 886.660 kb on - strandat 886.660 kb on - strandat 886.660 kb on - strandat 886.660 kb on - strandat 886.824 kb on + strandat 886.903 kb on - strandat 886.938 kb on + strandat 886.938 kb on + strandat 886.938 kb on + strandat 886.971 kb on - strandat 886.971 kb on - strandat 886.971 kb on - strandat 886.971 kb on - strandat 887.068 kb on + strand, within ABZR87_RS04240at 887.069 kb on - strand, within ABZR87_RS04240at 887.292 kb on + strandat 887.293 kb on - strandat 887.293 kb on - strandat 887.293 kb on - strandat 887.293 kb on - strandat 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.416 kb on - strand, within ABZR87_RS04245at 887.457 kb on + strand, within ABZR87_RS04245at 887.457 kb on + strand, within ABZR87_RS04245at 887.457 kb on + strand, within ABZR87_RS04245at 887.458 kb on - strand, within ABZR87_RS04245at 887.458 kb on - strand, within ABZR87_RS04245at 887.458 kb on - strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.592 kb on + strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.593 kb on - strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.613 kb on + strand, within ABZR87_RS04245at 887.614 kb on - strand, within ABZR87_RS04245at 887.614 kb on - strand, within ABZR87_RS04245at 887.614 kb on - strand, within ABZR87_RS04245at 887.646 kb on + strand, within ABZR87_RS04245at 887.646 kb on + strand, within ABZR87_RS04245at 887.646 kb on + strand, within ABZR87_RS04245at 887.646 kb on + strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.647 kb on - strand, within ABZR87_RS04245at 887.700 kb on + strand, within ABZR87_RS04245at 887.701 kb on - strand, within ABZR87_RS04245at 887.784 kb on + strand, within ABZR87_RS04245at 887.791 kb on + strand, within ABZR87_RS04245at 887.791 kb on + strand, within ABZR87_RS04245at 887.792 kb on - strand, within ABZR87_RS04245at 887.792 kb on - strand, within ABZR87_RS04245at 887.792 kb on - strand, within ABZR87_RS04245at 887.792 kb on - strand, within ABZR87_RS04245

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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883,827 + ABZR87_RS04225 0.67 -0.7
883,831 + ABZR87_RS04225 0.67 -2.4
883,831 + ABZR87_RS04225 0.67 -2.8
883,831 + ABZR87_RS04225 0.67 -0.3
883,831 + ABZR87_RS04225 0.67 -2.5
883,831 + ABZR87_RS04225 0.67 +0.8
883,832 - ABZR87_RS04225 0.67 +1.0
883,832 - ABZR87_RS04225 0.67 -2.2
883,832 - ABZR87_RS04225 0.67 -0.5
883,832 - ABZR87_RS04225 0.67 +0.3
883,832 - ABZR87_RS04225 0.67 -4.7
884,149 + -2.7
884,150 - -0.7
884,150 - -1.2
884,500 + ABZR87_RS04230 0.68 -2.4
884,500 + ABZR87_RS04230 0.68 +0.7
884,500 + ABZR87_RS04230 0.68 +0.2
884,500 + ABZR87_RS04230 0.68 -2.8
884,501 - ABZR87_RS04230 0.68 +0.6
884,501 - ABZR87_RS04230 0.68 -4.2
884,501 - ABZR87_RS04230 0.68 +1.5
884,509 + ABZR87_RS04230 0.69 -0.3
884,509 + ABZR87_RS04230 0.69 -1.2
884,509 + ABZR87_RS04230 0.69 +0.4
884,509 + ABZR87_RS04230 0.69 +1.4
884,509 + ABZR87_RS04230 0.69 -1.3
884,510 - ABZR87_RS04230 0.70 +0.2
884,510 - ABZR87_RS04230 0.70 +1.2
884,557 + ABZR87_RS04230 0.80 +1.5
884,557 + ABZR87_RS04230 0.80 +0.1
884,557 + ABZR87_RS04230 0.80 +0.2
884,557 + ABZR87_RS04230 0.80 -3.1
884,558 - ABZR87_RS04230 0.80 -2.4
884,558 - ABZR87_RS04230 0.80 +0.7
884,560 + ABZR87_RS04230 0.81 +0.6
884,560 + ABZR87_RS04230 0.81 -2.6
884,561 - ABZR87_RS04230 0.81 -0.1
884,787 + -1.9
884,787 + -2.4
884,787 + -4.2
884,787 + -0.4
884,787 + -3.7
884,787 + -1.5
884,787 + -4.1
884,787 + -0.6
884,787 + -3.8
884,787 + -3.7
884,787 + -3.0
884,788 - -3.5
884,788 - -1.1
884,788 - -0.8
884,788 - -3.6
884,788 - -0.1
884,788 - -2.3
885,357 - ABZR87_RS04235 0.32 +0.3
885,357 - ABZR87_RS04235 0.32 -2.7
885,444 + ABZR87_RS04235 0.36 -0.7
885,445 - ABZR87_RS04235 0.36 -3.7
885,445 - ABZR87_RS04235 0.36 -0.6
885,571 + ABZR87_RS04235 0.42 -3.0
885,571 + ABZR87_RS04235 0.42 -3.0
885,572 - ABZR87_RS04235 0.42 -3.0
885,893 + ABZR87_RS04235 0.56 -0.9
885,893 + ABZR87_RS04235 0.56 -2.6
885,893 + ABZR87_RS04235 0.56 -0.7
885,894 - ABZR87_RS04235 0.56 +1.7
885,894 - ABZR87_RS04235 0.56 +2.1
885,894 - ABZR87_RS04235 0.56 -1.3
886,144 + ABZR87_RS04235 0.67 -2.8
886,156 + ABZR87_RS04235 0.68 -4.0
886,156 + ABZR87_RS04235 0.68 +1.1
886,156 + ABZR87_RS04235 0.68 -1.4
886,156 + ABZR87_RS04235 0.68 +1.5
886,299 + ABZR87_RS04235 0.74 -4.0
886,299 + ABZR87_RS04235 0.74 -3.2
886,300 - ABZR87_RS04235 0.74 -1.2
886,300 - ABZR87_RS04235 0.74 -0.4
886,366 - ABZR87_RS04235 0.77 +2.1
886,366 - ABZR87_RS04235 0.77 -4.1
886,366 - ABZR87_RS04235 0.77 +0.4
886,402 + ABZR87_RS04235 0.79 -3.6
886,402 + ABZR87_RS04235 0.79 +0.3
886,403 - ABZR87_RS04235 0.79 +1.3
886,443 + ABZR87_RS04235 0.81 +1.4
886,443 + ABZR87_RS04235 0.81 -0.9
886,444 - ABZR87_RS04235 0.81 -1.2
886,659 + -0.5
886,660 - -0.8
886,660 - -0.8
886,660 - -3.4
886,660 - -2.4
886,824 + -1.2
886,903 - -1.4
886,938 + +1.0
886,938 + -4.3
886,938 + +0.6
886,971 - -0.4
886,971 - +1.0
886,971 - +0.7
886,971 - -2.1
887,068 + ABZR87_RS04240 0.26 +0.7
887,069 - ABZR87_RS04240 0.26 +0.6
887,292 + -1.8
887,293 - +1.3
887,293 - +0.7
887,293 - +0.5
887,293 - -2.0
887,416 - ABZR87_RS04245 0.17 -0.2
887,416 - ABZR87_RS04245 0.17 -3.1
887,416 - ABZR87_RS04245 0.17 -4.0
887,416 - ABZR87_RS04245 0.17 -0.3
887,416 - ABZR87_RS04245 0.17 +0.3
887,416 - ABZR87_RS04245 0.17 +1.3
887,416 - ABZR87_RS04245 0.17 +0.6
887,416 - ABZR87_RS04245 0.17 -0.9
887,457 + ABZR87_RS04245 0.23 -0.4
887,457 + ABZR87_RS04245 0.23 +0.2
887,457 + ABZR87_RS04245 0.23 -0.4
887,458 - ABZR87_RS04245 0.23 -0.6
887,458 - ABZR87_RS04245 0.23 -1.4
887,458 - ABZR87_RS04245 0.23 +0.2
887,592 + ABZR87_RS04245 0.41 +2.0
887,592 + ABZR87_RS04245 0.41 +0.5
887,592 + ABZR87_RS04245 0.41 -0.1
887,592 + ABZR87_RS04245 0.41 -2.8
887,592 + ABZR87_RS04245 0.41 +0.7
887,592 + ABZR87_RS04245 0.41 -4.3
887,592 + ABZR87_RS04245 0.41 -2.2
887,593 - ABZR87_RS04245 0.41 +1.0
887,593 - ABZR87_RS04245 0.41 +2.1
887,593 - ABZR87_RS04245 0.41 -0.8
887,593 - ABZR87_RS04245 0.41 -0.3
887,593 - ABZR87_RS04245 0.41 -4.3
887,593 - ABZR87_RS04245 0.41 +1.1
887,593 - ABZR87_RS04245 0.41 +0.1
887,593 - ABZR87_RS04245 0.41 +2.5
887,593 - ABZR87_RS04245 0.41 -1.2
887,593 - ABZR87_RS04245 0.41 +0.0
887,593 - ABZR87_RS04245 0.41 +0.6
887,593 - ABZR87_RS04245 0.41 -3.0
887,613 + ABZR87_RS04245 0.44 +0.2
887,613 + ABZR87_RS04245 0.44 +1.5
887,613 + ABZR87_RS04245 0.44 +1.9
887,613 + ABZR87_RS04245 0.44 -0.0
887,613 + ABZR87_RS04245 0.44 -0.1
887,613 + ABZR87_RS04245 0.44 -3.3
887,613 + ABZR87_RS04245 0.44 -0.2
887,613 + ABZR87_RS04245 0.44 +2.7
887,614 - ABZR87_RS04245 0.44 -0.1
887,614 - ABZR87_RS04245 0.44 +1.7
887,614 - ABZR87_RS04245 0.44 -3.0
887,646 + ABZR87_RS04245 0.49 -1.3
887,646 + ABZR87_RS04245 0.49 +1.5
887,646 + ABZR87_RS04245 0.49 +0.5
887,646 + ABZR87_RS04245 0.49 +0.2
887,647 - ABZR87_RS04245 0.49 +1.2
887,647 - ABZR87_RS04245 0.49 +2.4
887,647 - ABZR87_RS04245 0.49 -1.0
887,647 - ABZR87_RS04245 0.49 -1.3
887,647 - ABZR87_RS04245 0.49 +0.2
887,647 - ABZR87_RS04245 0.49 -1.2
887,700 + ABZR87_RS04245 0.56 -3.9
887,701 - ABZR87_RS04245 0.56 +1.1
887,784 + ABZR87_RS04245 0.68 -2.0
887,791 + ABZR87_RS04245 0.69 +1.8
887,791 + ABZR87_RS04245 0.69 -1.0
887,792 - ABZR87_RS04245 0.69 -1.0
887,792 - ABZR87_RS04245 0.69 -3.5
887,792 - ABZR87_RS04245 0.69 -0.1
887,792 - ABZR87_RS04245 0.69 -0.8

Or see this region's nucleotide sequence