Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04225 and ABZR87_RS04230 are separated by 75 nucleotides ABZR87_RS04230 and ABZR87_RS04235 overlap by 4 nucleotides
ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114
_RS04225
ABZR87_RS04230: ABZR87_RS04230 - Cu(I)-responsive transcriptional regulator, at 884,190 to 884,648
_RS04230
ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867
_RS04235
Position (kb) 884
885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 883.203 kb on + strand at 883.203 kb on + strand at 883.378 kb on + strand, within ABZR87_RS04225 at 883.378 kb on + strand, within ABZR87_RS04225 at 883.379 kb on - strand, within ABZR87_RS04225 at 883.381 kb on - strand, within ABZR87_RS04225 at 883.827 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 884.149 kb on + strand at 884.150 kb on - strand at 884.150 kb on - strand at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.510 kb on - strand, within ABZR87_RS04230 at 884.510 kb on - strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.558 kb on - strand, within ABZR87_RS04230 at 884.558 kb on - strand, within ABZR87_RS04230 at 884.560 kb on + strand, within ABZR87_RS04230 at 884.560 kb on + strand, within ABZR87_RS04230 at 884.561 kb on - strand, within ABZR87_RS04230 at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 885.357 kb on - strand, within ABZR87_RS04235 at 885.357 kb on - strand, within ABZR87_RS04235 at 885.444 kb on + strand, within ABZR87_RS04235 at 885.445 kb on - strand, within ABZR87_RS04235 at 885.445 kb on - strand, within ABZR87_RS04235 at 885.571 kb on + strand, within ABZR87_RS04235 at 885.571 kb on + strand, within ABZR87_RS04235 at 885.572 kb on - strand, within ABZR87_RS04235
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 883,203 + -2.0 883,203 + -0.9 883,378 + ABZR87_RS04225 0.15 -3.2 883,378 + ABZR87_RS04225 0.15 +0.3 883,379 - ABZR87_RS04225 0.15 -0.0 883,381 - ABZR87_RS04225 0.16 -0.6 883,827 + ABZR87_RS04225 0.67 -0.7 883,831 + ABZR87_RS04225 0.67 -2.4 883,831 + ABZR87_RS04225 0.67 -2.8 883,831 + ABZR87_RS04225 0.67 -0.3 883,831 + ABZR87_RS04225 0.67 -2.5 883,831 + ABZR87_RS04225 0.67 +0.8 883,832 - ABZR87_RS04225 0.67 +1.0 883,832 - ABZR87_RS04225 0.67 -2.2 883,832 - ABZR87_RS04225 0.67 -0.5 883,832 - ABZR87_RS04225 0.67 +0.3 883,832 - ABZR87_RS04225 0.67 -4.7 884,149 + -2.7 884,150 - -0.7 884,150 - -1.2 884,500 + ABZR87_RS04230 0.68 -2.4 884,500 + ABZR87_RS04230 0.68 +0.7 884,500 + ABZR87_RS04230 0.68 +0.2 884,500 + ABZR87_RS04230 0.68 -2.8 884,501 - ABZR87_RS04230 0.68 +0.6 884,501 - ABZR87_RS04230 0.68 -4.2 884,501 - ABZR87_RS04230 0.68 +1.5 884,509 + ABZR87_RS04230 0.69 -0.3 884,509 + ABZR87_RS04230 0.69 -1.2 884,509 + ABZR87_RS04230 0.69 +0.4 884,509 + ABZR87_RS04230 0.69 +1.4 884,509 + ABZR87_RS04230 0.69 -1.3 884,510 - ABZR87_RS04230 0.70 +0.2 884,510 - ABZR87_RS04230 0.70 +1.2 884,557 + ABZR87_RS04230 0.80 +1.5 884,557 + ABZR87_RS04230 0.80 +0.1 884,557 + ABZR87_RS04230 0.80 +0.2 884,557 + ABZR87_RS04230 0.80 -3.1 884,558 - ABZR87_RS04230 0.80 -2.4 884,558 - ABZR87_RS04230 0.80 +0.7 884,560 + ABZR87_RS04230 0.81 +0.6 884,560 + ABZR87_RS04230 0.81 -2.6 884,561 - ABZR87_RS04230 0.81 -0.1 884,787 + -1.9 884,787 + -2.4 884,787 + -4.2 884,787 + -0.4 884,787 + -3.7 884,787 + -1.5 884,787 + -4.1 884,787 + -0.6 884,787 + -3.8 884,787 + -3.7 884,787 + -3.0 884,788 - -3.5 884,788 - -1.1 884,788 - -0.8 884,788 - -3.6 884,788 - -0.1 884,788 - -2.3 885,357 - ABZR87_RS04235 0.32 +0.3 885,357 - ABZR87_RS04235 0.32 -2.7 885,444 + ABZR87_RS04235 0.36 -0.7 885,445 - ABZR87_RS04235 0.36 -3.7 885,445 - ABZR87_RS04235 0.36 -0.6 885,571 + ABZR87_RS04235 0.42 -3.0 885,571 + ABZR87_RS04235 0.42 -3.0 885,572 - ABZR87_RS04235 0.42 -3.0
Or see this region's nucleotide sequence