Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04220 and ABZR87_RS04225 are separated by 68 nucleotides ABZR87_RS04225 and ABZR87_RS04230 are separated by 75 nucleotides ABZR87_RS04230 and ABZR87_RS04235 overlap by 4 nucleotides
ABZR87_RS04220: ABZR87_RS04220 - choline dehydrogenase, at 881,542 to 883,176
_RS04220
ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114
_RS04225
ABZR87_RS04230: ABZR87_RS04230 - Cu(I)-responsive transcriptional regulator, at 884,190 to 884,648
_RS04230
ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867
_RS04235
Position (kb) 883
884
885 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.455 kb on + strand, within ABZR87_RS04220 at 882.456 kb on - strand, within ABZR87_RS04220 at 882.476 kb on + strand, within ABZR87_RS04220 at 882.477 kb on - strand, within ABZR87_RS04220 at 882.477 kb on - strand, within ABZR87_RS04220 at 882.869 kb on + strand, within ABZR87_RS04220 at 882.870 kb on - strand, within ABZR87_RS04220 at 882.870 kb on - strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.893 kb on + strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 882.894 kb on - strand, within ABZR87_RS04220 at 883.022 kb on + strand at 883.022 kb on + strand at 883.022 kb on + strand at 883.022 kb on + strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.023 kb on - strand at 883.028 kb on + strand at 883.056 kb on - strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.160 kb on + strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.161 kb on - strand at 883.166 kb on + strand at 883.166 kb on + strand at 883.167 kb on - strand at 883.167 kb on - strand at 883.167 kb on - strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.170 kb on + strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.171 kb on - strand at 883.203 kb on + strand at 883.203 kb on + strand at 883.378 kb on + strand, within ABZR87_RS04225 at 883.378 kb on + strand, within ABZR87_RS04225 at 883.379 kb on - strand, within ABZR87_RS04225 at 883.381 kb on - strand, within ABZR87_RS04225 at 883.827 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.831 kb on + strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 883.832 kb on - strand, within ABZR87_RS04225 at 884.149 kb on + strand at 884.150 kb on - strand at 884.150 kb on - strand at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.500 kb on + strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.501 kb on - strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.509 kb on + strand, within ABZR87_RS04230 at 884.510 kb on - strand, within ABZR87_RS04230 at 884.510 kb on - strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.557 kb on + strand, within ABZR87_RS04230 at 884.558 kb on - strand, within ABZR87_RS04230 at 884.558 kb on - strand, within ABZR87_RS04230 at 884.560 kb on + strand, within ABZR87_RS04230 at 884.560 kb on + strand, within ABZR87_RS04230 at 884.561 kb on - strand, within ABZR87_RS04230 at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.787 kb on + strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand at 884.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 882,455 + ABZR87_RS04220 0.56 -0.2 882,455 + ABZR87_RS04220 0.56 +1.1 882,455 + ABZR87_RS04220 0.56 +2.3 882,456 - ABZR87_RS04220 0.56 +1.3 882,476 + ABZR87_RS04220 0.57 -1.1 882,477 - ABZR87_RS04220 0.57 -2.6 882,477 - ABZR87_RS04220 0.57 -3.4 882,869 + ABZR87_RS04220 0.81 -3.4 882,870 - ABZR87_RS04220 0.81 -0.2 882,870 - ABZR87_RS04220 0.81 +1.3 882,893 + ABZR87_RS04220 0.83 -2.6 882,893 + ABZR87_RS04220 0.83 -0.6 882,893 + ABZR87_RS04220 0.83 +1.4 882,893 + ABZR87_RS04220 0.83 -1.4 882,893 + ABZR87_RS04220 0.83 -0.8 882,894 - ABZR87_RS04220 0.83 +0.4 882,894 - ABZR87_RS04220 0.83 -3.4 882,894 - ABZR87_RS04220 0.83 +2.4 882,894 - ABZR87_RS04220 0.83 +0.0 882,894 - ABZR87_RS04220 0.83 +0.5 883,022 + -1.8 883,022 + -0.6 883,022 + -1.6 883,022 + +2.0 883,023 - +0.1 883,023 - -0.6 883,023 - -2.4 883,023 - +0.4 883,028 + +0.3 883,056 - +1.3 883,160 + +1.0 883,160 + -1.0 883,160 + -2.1 883,160 + -0.8 883,160 + +1.6 883,161 - -0.1 883,161 - -5.4 883,161 - -0.6 883,161 - +2.3 883,161 - -2.6 883,161 - -0.3 883,166 + +0.3 883,166 + +0.8 883,167 - -2.2 883,167 - +0.2 883,167 - -2.6 883,170 + -1.9 883,170 + +1.3 883,170 + +0.6 883,170 + +2.3 883,170 + +0.4 883,170 + -0.8 883,171 - -0.8 883,171 - +0.3 883,171 - -0.7 883,171 - -0.4 883,171 - -2.3 883,203 + -2.0 883,203 + -0.9 883,378 + ABZR87_RS04225 0.15 -3.2 883,378 + ABZR87_RS04225 0.15 +0.3 883,379 - ABZR87_RS04225 0.15 -0.0 883,381 - ABZR87_RS04225 0.16 -0.6 883,827 + ABZR87_RS04225 0.67 -0.7 883,831 + ABZR87_RS04225 0.67 -2.4 883,831 + ABZR87_RS04225 0.67 -2.8 883,831 + ABZR87_RS04225 0.67 -0.3 883,831 + ABZR87_RS04225 0.67 -2.5 883,831 + ABZR87_RS04225 0.67 +0.8 883,832 - ABZR87_RS04225 0.67 +1.0 883,832 - ABZR87_RS04225 0.67 -2.2 883,832 - ABZR87_RS04225 0.67 -0.5 883,832 - ABZR87_RS04225 0.67 +0.3 883,832 - ABZR87_RS04225 0.67 -4.7 884,149 + -2.7 884,150 - -0.7 884,150 - -1.2 884,500 + ABZR87_RS04230 0.68 -2.4 884,500 + ABZR87_RS04230 0.68 +0.7 884,500 + ABZR87_RS04230 0.68 +0.2 884,500 + ABZR87_RS04230 0.68 -2.8 884,501 - ABZR87_RS04230 0.68 +0.6 884,501 - ABZR87_RS04230 0.68 -4.2 884,501 - ABZR87_RS04230 0.68 +1.5 884,509 + ABZR87_RS04230 0.69 -0.3 884,509 + ABZR87_RS04230 0.69 -1.2 884,509 + ABZR87_RS04230 0.69 +0.4 884,509 + ABZR87_RS04230 0.69 +1.4 884,509 + ABZR87_RS04230 0.69 -1.3 884,510 - ABZR87_RS04230 0.70 +0.2 884,510 - ABZR87_RS04230 0.70 +1.2 884,557 + ABZR87_RS04230 0.80 +1.5 884,557 + ABZR87_RS04230 0.80 +0.1 884,557 + ABZR87_RS04230 0.80 +0.2 884,557 + ABZR87_RS04230 0.80 -3.1 884,558 - ABZR87_RS04230 0.80 -2.4 884,558 - ABZR87_RS04230 0.80 +0.7 884,560 + ABZR87_RS04230 0.81 +0.6 884,560 + ABZR87_RS04230 0.81 -2.6 884,561 - ABZR87_RS04230 0.81 -0.1 884,787 + -1.9 884,787 + -2.4 884,787 + -4.2 884,787 + -0.4 884,787 + -3.7 884,787 + -1.5 884,787 + -4.1 884,787 + -0.6 884,787 + -3.8 884,787 + -3.7 884,787 + -3.0 884,788 - -3.5 884,788 - -1.1 884,788 - -0.8 884,788 - -3.6 884,788 - -0.1 884,788 - -2.3
Or see this region's nucleotide sequence