Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03975 and ABZR87_RS03980 are separated by 590 nucleotides ABZR87_RS03980 and ABZR87_RS03985 are separated by 94 nucleotides ABZR87_RS03985 and ABZR87_RS03990 are separated by 217 nucleotides
ABZR87_RS03975: ABZR87_RS03975 - primosomal protein N', at 832,700 to 834,997
_RS03975
ABZR87_RS03980: ABZR87_RS03980 - uroporphyrinogen decarboxylase, at 835,588 to 836,682
_RS03980
ABZR87_RS03985: ABZR87_RS03985 - cupin domain-containing protein, at 836,777 to 837,262
_RS03985
ABZR87_RS03990: ABZR87_RS03990 - GFA family protein, at 837,480 to 837,827
_RS03990
Position (kb) 835
836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 834.957 kb on + strand at 835.127 kb on + strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.131 kb on - strand at 835.131 kb on - strand at 835.131 kb on - strand at 835.141 kb on + strand at 835.141 kb on + strand at 835.142 kb on - strand at 835.142 kb on - strand at 835.179 kb on + strand at 835.180 kb on - strand at 835.199 kb on - strand at 835.258 kb on - strand at 835.271 kb on + strand at 835.272 kb on - strand at 835.272 kb on - strand at 835.309 kb on + strand at 835.309 kb on + strand at 835.309 kb on + strand at 835.310 kb on - strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.378 kb on - strand at 835.378 kb on - strand at 835.401 kb on + strand at 835.402 kb on - strand at 835.402 kb on - strand at 835.423 kb on - strand at 835.472 kb on + strand at 835.486 kb on + strand at 835.487 kb on - strand at 835.487 kb on - strand at 835.487 kb on - strand at 835.558 kb on + strand at 835.589 kb on + strand at 835.590 kb on - strand at 835.590 kb on - strand at 835.590 kb on - strand at 835.590 kb on - strand at 836.713 kb on + strand at 836.713 kb on + strand at 836.713 kb on + strand at 836.713 kb on + strand at 836.713 kb on + strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.714 kb on - strand at 836.730 kb on - strand at 836.795 kb on - strand at 836.958 kb on + strand, within ABZR87_RS03985 at 836.958 kb on + strand, within ABZR87_RS03985 at 836.958 kb on + strand, within ABZR87_RS03985 at 836.958 kb on + strand, within ABZR87_RS03985 at 836.958 kb on + strand, within ABZR87_RS03985 at 836.958 kb on + strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.959 kb on - strand, within ABZR87_RS03985 at 836.976 kb on + strand, within ABZR87_RS03985 at 836.976 kb on + strand, within ABZR87_RS03985 at 836.977 kb on - strand, within ABZR87_RS03985 at 836.977 kb on - strand, within ABZR87_RS03985 at 836.977 kb on - strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.980 kb on + strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 836.981 kb on - strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.061 kb on + strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.062 kb on - strand, within ABZR87_RS03985 at 837.376 kb on + strand at 837.376 kb on + strand at 837.376 kb on + strand at 837.376 kb on + strand at 837.382 kb on + strand at 837.382 kb on + strand at 837.383 kb on - strand at 837.383 kb on - strand at 837.383 kb on - strand at 837.383 kb on - strand at 837.383 kb on - strand at 837.383 kb on - strand at 837.429 kb on + strand at 837.429 kb on + strand at 837.429 kb on + strand at 837.429 kb on + strand at 837.430 kb on - strand at 837.430 kb on - strand at 837.431 kb on + strand at 837.431 kb on + strand at 837.432 kb on - strand at 837.432 kb on - strand at 837.432 kb on - strand at 837.488 kb on + strand at 837.488 kb on + strand at 837.488 kb on + strand at 837.489 kb on - strand at 837.489 kb on - strand at 837.489 kb on - strand at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.651 kb on + strand, within ABZR87_RS03990 at 837.652 kb on - strand, within ABZR87_RS03990 at 837.652 kb on - strand, within ABZR87_RS03990 at 837.652 kb on - strand, within ABZR87_RS03990 at 837.652 kb on - strand, within ABZR87_RS03990 at 837.652 kb on - strand, within ABZR87_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 834,957 + -0.9 835,127 + -3.5 835,128 - -4.2 835,128 - -3.0 835,128 - -0.2 835,128 - -4.0 835,128 - +1.6 835,130 + -2.8 835,130 + -0.3 835,130 + -0.0 835,130 + +0.0 835,131 - +0.8 835,131 - +2.4 835,131 - +0.3 835,141 + +1.2 835,141 + +0.8 835,142 - +1.0 835,142 - -0.5 835,179 + -3.2 835,180 - +1.6 835,199 - -4.0 835,258 - -3.4 835,271 + -1.7 835,272 - -2.5 835,272 - -1.6 835,309 + -0.4 835,309 + -4.3 835,309 + -3.8 835,310 - -2.9 835,377 + +0.5 835,377 + -2.2 835,377 + +0.1 835,377 + -3.4 835,378 - +0.5 835,378 - +1.1 835,401 + -1.5 835,402 - +0.4 835,402 - -0.4 835,423 - +1.1 835,472 + +0.5 835,486 + +0.5 835,487 - -0.8 835,487 - -3.8 835,487 - +0.2 835,558 + -3.2 835,589 + +0.4 835,590 - -1.3 835,590 - +0.2 835,590 - -0.3 835,590 - -0.5 836,713 + -4.7 836,713 + -1.0 836,713 + -0.0 836,713 + -1.7 836,713 + +1.1 836,714 - -2.2 836,714 - +0.8 836,714 - -2.1 836,714 - +1.5 836,714 - -1.5 836,714 - -0.5 836,714 - -4.2 836,714 - +0.7 836,730 - +0.9 836,795 - +2.1 836,958 + ABZR87_RS03985 0.37 -2.3 836,958 + ABZR87_RS03985 0.37 -4.3 836,958 + ABZR87_RS03985 0.37 -2.0 836,958 + ABZR87_RS03985 0.37 +1.0 836,958 + ABZR87_RS03985 0.37 -3.5 836,958 + ABZR87_RS03985 0.37 -3.2 836,959 - ABZR87_RS03985 0.37 +1.0 836,959 - ABZR87_RS03985 0.37 -0.2 836,959 - ABZR87_RS03985 0.37 +0.9 836,959 - ABZR87_RS03985 0.37 +0.4 836,959 - ABZR87_RS03985 0.37 -1.7 836,959 - ABZR87_RS03985 0.37 +0.8 836,959 - ABZR87_RS03985 0.37 -1.1 836,976 + ABZR87_RS03985 0.41 -1.2 836,976 + ABZR87_RS03985 0.41 +0.7 836,977 - ABZR87_RS03985 0.41 +0.5 836,977 - ABZR87_RS03985 0.41 -2.5 836,977 - ABZR87_RS03985 0.41 -4.6 836,980 + ABZR87_RS03985 0.42 +0.5 836,980 + ABZR87_RS03985 0.42 +0.7 836,980 + ABZR87_RS03985 0.42 -3.2 836,980 + ABZR87_RS03985 0.42 +0.7 836,980 + ABZR87_RS03985 0.42 +0.9 836,980 + ABZR87_RS03985 0.42 +1.1 836,980 + ABZR87_RS03985 0.42 +0.3 836,980 + ABZR87_RS03985 0.42 +0.5 836,980 + ABZR87_RS03985 0.42 -0.5 836,980 + ABZR87_RS03985 0.42 -0.3 836,980 + ABZR87_RS03985 0.42 +0.7 836,980 + ABZR87_RS03985 0.42 -3.9 836,980 + ABZR87_RS03985 0.42 +0.2 836,980 + ABZR87_RS03985 0.42 +1.9 836,981 - ABZR87_RS03985 0.42 -2.3 836,981 - ABZR87_RS03985 0.42 -0.1 836,981 - ABZR87_RS03985 0.42 -1.9 836,981 - ABZR87_RS03985 0.42 +0.2 836,981 - ABZR87_RS03985 0.42 +2.0 836,981 - ABZR87_RS03985 0.42 +1.4 836,981 - ABZR87_RS03985 0.42 -0.5 836,981 - ABZR87_RS03985 0.42 -1.1 836,981 - ABZR87_RS03985 0.42 +0.6 836,981 - ABZR87_RS03985 0.42 +0.7 836,981 - ABZR87_RS03985 0.42 +0.2 836,981 - ABZR87_RS03985 0.42 +2.1 836,981 - ABZR87_RS03985 0.42 +0.8 836,981 - ABZR87_RS03985 0.42 +0.2 837,061 + ABZR87_RS03985 0.58 -2.4 837,061 + ABZR87_RS03985 0.58 +1.4 837,061 + ABZR87_RS03985 0.58 +1.7 837,061 + ABZR87_RS03985 0.58 +0.7 837,061 + ABZR87_RS03985 0.58 -2.7 837,061 + ABZR87_RS03985 0.58 +2.4 837,062 - ABZR87_RS03985 0.59 -0.1 837,062 - ABZR87_RS03985 0.59 +1.2 837,062 - ABZR87_RS03985 0.59 +0.7 837,062 - ABZR87_RS03985 0.59 -1.0 837,062 - ABZR87_RS03985 0.59 +0.7 837,062 - ABZR87_RS03985 0.59 -1.0 837,376 + +0.3 837,376 + +0.2 837,376 + +0.3 837,376 + -3.3 837,382 + +0.5 837,382 + +2.4 837,383 - +0.8 837,383 - -2.7 837,383 - -3.0 837,383 - -1.9 837,383 - -0.5 837,383 - +0.3 837,429 + -1.4 837,429 + -2.8 837,429 + -1.2 837,429 + -0.2 837,430 - -1.8 837,430 - +0.1 837,431 + +0.1 837,431 + +0.4 837,432 - -0.1 837,432 - +0.1 837,432 - +0.5 837,488 + -1.3 837,488 + -3.7 837,488 + -3.0 837,489 - -0.1 837,489 - -2.1 837,489 - +0.1 837,651 + ABZR87_RS03990 0.49 -1.3 837,651 + ABZR87_RS03990 0.49 -0.3 837,651 + ABZR87_RS03990 0.49 -1.6 837,651 + ABZR87_RS03990 0.49 +0.6 837,651 + ABZR87_RS03990 0.49 -2.3 837,651 + ABZR87_RS03990 0.49 -2.6 837,651 + ABZR87_RS03990 0.49 +0.6 837,651 + ABZR87_RS03990 0.49 -3.4 837,652 - ABZR87_RS03990 0.49 -1.7 837,652 - ABZR87_RS03990 0.49 +1.5 837,652 - ABZR87_RS03990 0.49 -0.0 837,652 - ABZR87_RS03990 0.49 -0.2 837,652 - ABZR87_RS03990 0.49 +0.8
Or see this region's nucleotide sequence