Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03600 and ABZR87_RS03605 are separated by 111 nucleotides ABZR87_RS03605 and ABZR87_RS03610 are separated by 173 nucleotides
ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516
_RS03600
ABZR87_RS03605: ABZR87_RS03605 - co-chaperone GroES, at 757,628 to 757,945
_RS03605
ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760
_RS03610
Position (kb) 757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 756.830 kb on - strand, within ABZR87_RS03600 at 756.876 kb on + strand, within ABZR87_RS03600 at 756.877 kb on - strand, within ABZR87_RS03600 at 756.877 kb on - strand, within ABZR87_RS03600 at 756.909 kb on + strand, within ABZR87_RS03600 at 756.909 kb on + strand, within ABZR87_RS03600 at 756.922 kb on - strand, within ABZR87_RS03600 at 757.439 kb on - strand at 757.471 kb on + strand at 757.472 kb on - strand at 757.472 kb on - strand at 757.532 kb on + strand at 757.737 kb on + strand, within ABZR87_RS03605 at 757.737 kb on + strand, within ABZR87_RS03605 at 757.738 kb on - strand, within ABZR87_RS03605 at 757.738 kb on - strand, within ABZR87_RS03605 at 757.926 kb on + strand at 757.926 kb on + strand at 757.926 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 758.059 kb on + strand at 758.059 kb on + strand at 758.108 kb on - strand at 758.156 kb on + strand at 758.163 kb on + strand at 758.315 kb on + strand, within ABZR87_RS03610 at 758.315 kb on + strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.400 kb on - strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on - strand, within ABZR87_RS03610 at 758.671 kb on - strand, within ABZR87_RS03610 at 758.779 kb on - strand at 758.814 kb on + strand at 758.814 kb on + strand at 758.819 kb on + strand at 758.819 kb on + strand at 758.820 kb on - strand at 758.820 kb on - strand at 758.907 kb on + strand at 758.907 kb on + strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 756,830 - ABZR87_RS03600 0.58 -3.3 756,876 + ABZR87_RS03600 0.61 -3.0 756,877 - ABZR87_RS03600 0.61 +1.1 756,877 - ABZR87_RS03600 0.61 +2.1 756,909 + ABZR87_RS03600 0.63 -0.5 756,909 + ABZR87_RS03600 0.63 -1.4 756,922 - ABZR87_RS03600 0.63 -3.5 757,439 - +0.4 757,471 + +1.3 757,472 - +1.3 757,472 - +1.1 757,532 + +0.5 757,737 + ABZR87_RS03605 0.34 +0.3 757,737 + ABZR87_RS03605 0.34 -3.1 757,738 - ABZR87_RS03605 0.35 -0.5 757,738 - ABZR87_RS03605 0.35 +0.3 757,926 + +1.3 757,926 + +0.6 757,926 + -0.6 757,963 + +0.4 757,963 + -0.4 757,963 + +0.1 757,963 + -3.1 757,963 + +1.5 757,963 + -0.5 757,963 + -1.1 757,963 + -0.1 757,964 - -0.8 757,964 - -3.6 757,964 - -1.0 757,964 - +0.8 757,964 - -1.6 758,059 + -2.0 758,059 + -3.4 758,108 - +0.3 758,156 + +1.3 758,163 + +0.7 758,315 + ABZR87_RS03610 0.31 +0.4 758,315 + ABZR87_RS03610 0.31 +1.3 758,316 - ABZR87_RS03610 0.31 +0.7 758,316 - ABZR87_RS03610 0.31 -3.8 758,399 + ABZR87_RS03610 0.44 -2.4 758,399 + ABZR87_RS03610 0.44 -2.6 758,400 - ABZR87_RS03610 0.44 -0.7 758,670 + ABZR87_RS03610 0.86 -3.4 758,670 + ABZR87_RS03610 0.86 -2.7 758,670 - ABZR87_RS03610 0.86 -1.7 758,671 - ABZR87_RS03610 0.86 +0.7 758,779 - -2.3 758,814 + -2.7 758,814 + +0.9 758,819 + +1.7 758,819 + +0.5 758,820 - -1.2 758,820 - +0.3 758,907 + -0.4 758,907 + -1.2 758,908 - +0.8 758,908 - -0.9 758,908 - -0.4 758,908 - +0.5
Or see this region's nucleotide sequence