Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03430 and ABZR87_RS03435 are separated by 164 nucleotides ABZR87_RS03435 and ABZR87_RS03440 are separated by 10 nucleotides ABZR87_RS03440 and ABZR87_RS03445 are separated by 17 nucleotides
ABZR87_RS03430: ABZR87_RS03430 - type II secretion system minor pseudopilin GspK, at 714,890 to 715,969
_RS03430
ABZR87_RS03435: ABZR87_RS03435 - type II secretion system protein GspL, at 716,134 to 717,570
_RS03435
ABZR87_RS03440: ABZR87_RS03440 - type II secretion system protein GspM, at 717,581 to 718,150
_RS03440
ABZR87_RS03445: ABZR87_RS03445 - type II secretion system protein N, at 718,168 to 719,010
_RS03445
Position (kb) 716
717
718 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.364 kb on + strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.574 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.666 kb on - strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.847 kb on + strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430 at 716.001 kb on - strand at 716.013 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.036 kb on + strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.037 kb on - strand at 716.122 kb on + strand at 716.122 kb on + strand at 716.122 kb on + strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.123 kb on - strand at 716.149 kb on + strand at 716.149 kb on + strand at 716.149 kb on + strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.150 kb on - strand at 716.448 kb on + strand, within ABZR87_RS03435 at 716.565 kb on + strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.566 kb on - strand, within ABZR87_RS03435 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 717.407 kb on - strand, within ABZR87_RS03435 at 717.533 kb on + strand at 717.569 kb on - strand at 717.569 kb on - strand at 717.749 kb on + strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.817 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.300 kb on + strand, within ABZR87_RS03445 at 718.301 kb on - strand, within ABZR87_RS03445 at 718.400 kb on + strand, within ABZR87_RS03445 at 718.401 kb on - strand, within ABZR87_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 715,244 + ABZR87_RS03430 0.33 -4.0 715,244 + ABZR87_RS03430 0.33 -1.2 715,244 + ABZR87_RS03430 0.33 -2.1 715,245 - ABZR87_RS03430 0.33 +0.3 715,245 - ABZR87_RS03430 0.33 -1.5 715,245 - ABZR87_RS03430 0.33 -2.2 715,245 - ABZR87_RS03430 0.33 +0.7 715,245 - ABZR87_RS03430 0.33 +1.0 715,245 - ABZR87_RS03430 0.33 +0.3 715,245 - ABZR87_RS03430 0.33 -2.9 715,245 - ABZR87_RS03430 0.33 -3.1 715,364 + ABZR87_RS03430 0.44 +1.2 715,365 - ABZR87_RS03430 0.44 +1.3 715,365 - ABZR87_RS03430 0.44 +0.2 715,424 + ABZR87_RS03430 0.49 -3.2 715,424 + ABZR87_RS03430 0.49 -2.8 715,424 + ABZR87_RS03430 0.49 +1.5 715,424 + ABZR87_RS03430 0.49 +1.1 715,425 - ABZR87_RS03430 0.50 -0.4 715,425 - ABZR87_RS03430 0.50 -1.4 715,425 - ABZR87_RS03430 0.50 -3.4 715,425 - ABZR87_RS03430 0.50 +0.1 715,425 - ABZR87_RS03430 0.50 -1.1 715,425 - ABZR87_RS03430 0.50 -1.1 715,574 + ABZR87_RS03430 0.63 -4.3 715,607 + ABZR87_RS03430 0.66 -4.1 715,607 + ABZR87_RS03430 0.66 -3.8 715,608 - ABZR87_RS03430 0.66 +0.5 715,608 - ABZR87_RS03430 0.66 +0.1 715,665 + ABZR87_RS03430 0.72 -1.4 715,665 + ABZR87_RS03430 0.72 +1.6 715,666 - ABZR87_RS03430 0.72 +0.1 715,736 + ABZR87_RS03430 0.78 -3.6 715,736 + ABZR87_RS03430 0.78 +0.8 715,737 - ABZR87_RS03430 0.78 -0.1 715,737 - ABZR87_RS03430 0.78 -0.6 715,737 - ABZR87_RS03430 0.78 +0.6 715,737 - ABZR87_RS03430 0.78 -1.7 715,747 + ABZR87_RS03430 0.79 -0.5 715,747 + ABZR87_RS03430 0.79 -4.6 715,835 + ABZR87_RS03430 0.88 -0.0 715,835 + ABZR87_RS03430 0.88 +0.4 715,847 + ABZR87_RS03430 0.89 +0.4 715,848 - ABZR87_RS03430 0.89 -0.6 715,848 - ABZR87_RS03430 0.89 -2.7 716,001 - +1.9 716,013 + +0.2 716,036 + -1.1 716,036 + -0.1 716,036 + -0.6 716,036 + -0.7 716,036 + +1.0 716,037 - -1.0 716,037 - +0.2 716,037 - -1.6 716,037 - +1.9 716,122 + -2.8 716,122 + +2.9 716,122 + +0.1 716,123 - +1.2 716,123 - +2.2 716,123 - -3.6 716,123 - +0.6 716,149 + -1.9 716,149 + +2.1 716,149 + -0.5 716,150 - -3.6 716,150 - -0.4 716,150 - -0.2 716,150 - +2.3 716,150 - -3.3 716,150 - -1.5 716,448 + ABZR87_RS03435 0.22 -0.5 716,565 + ABZR87_RS03435 0.30 -1.1 716,566 - ABZR87_RS03435 0.30 -0.4 716,566 - ABZR87_RS03435 0.30 -0.2 716,566 - ABZR87_RS03435 0.30 +0.7 716,566 - ABZR87_RS03435 0.30 -0.9 716,566 - ABZR87_RS03435 0.30 -2.1 716,837 + ABZR87_RS03435 0.49 +0.5 716,837 + ABZR87_RS03435 0.49 -4.9 716,838 - ABZR87_RS03435 0.49 -1.8 716,838 - ABZR87_RS03435 0.49 +0.5 716,838 - ABZR87_RS03435 0.49 -0.9 717,407 - ABZR87_RS03435 0.89 -0.3 717,533 + +0.9 717,569 - +0.8 717,569 - +1.5 717,749 + ABZR87_RS03440 0.29 -0.9 717,750 - ABZR87_RS03440 0.30 +1.4 717,750 - ABZR87_RS03440 0.30 -0.4 717,750 - ABZR87_RS03440 0.30 -1.2 717,817 + ABZR87_RS03440 0.41 +1.9 718,082 + ABZR87_RS03440 0.88 -2.8 718,082 + ABZR87_RS03440 0.88 -0.4 718,082 + ABZR87_RS03440 0.88 -3.0 718,083 - ABZR87_RS03440 0.88 -0.8 718,083 - ABZR87_RS03440 0.88 +0.9 718,083 - ABZR87_RS03440 0.88 -1.1 718,083 - ABZR87_RS03440 0.88 -1.0 718,083 - ABZR87_RS03440 0.88 -4.1 718,083 - ABZR87_RS03440 0.88 +1.2 718,300 + ABZR87_RS03445 0.16 +0.5 718,301 - ABZR87_RS03445 0.16 +1.7 718,400 + ABZR87_RS03445 0.28 -3.4 718,401 - ABZR87_RS03445 0.28 -4.1
Or see this region's nucleotide sequence