Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03420

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03410 and ABZR87_RS03415 are separated by 32 nucleotidesABZR87_RS03415 and ABZR87_RS03420 overlap by 4 nucleotidesABZR87_RS03420 and ABZR87_RS03425 overlap by 20 nucleotidesABZR87_RS03425 and ABZR87_RS03430 are separated by 1 nucleotides ABZR87_RS03410: ABZR87_RS03410 - type II secretion system major pseudopilin GspG, at 712,742 to 713,212 _RS03410 ABZR87_RS03415: ABZR87_RS03415 - GspH/FimT family pseudopilin, at 713,245 to 713,757 _RS03415 ABZR87_RS03420: ABZR87_RS03420 - type II secretion system minor pseudopilin GspI, at 713,754 to 714,164 _RS03420 ABZR87_RS03425: ABZR87_RS03425 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 714,145 to 714,888 _RS03425 ABZR87_RS03430: ABZR87_RS03430 - type II secretion system minor pseudopilin GspK, at 714,890 to 715,969 _RS03430 Position (kb) 713 714 715Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 712.850 kb on - strand, within ABZR87_RS03410at 712.955 kb on + strand, within ABZR87_RS03410at 712.955 kb on + strand, within ABZR87_RS03410at 712.956 kb on - strand, within ABZR87_RS03410at 712.956 kb on - strand, within ABZR87_RS03410at 712.956 kb on - strand, within ABZR87_RS03410at 712.956 kb on - strand, within ABZR87_RS03410at 713.061 kb on - strand, within ABZR87_RS03410at 713.061 kb on - strand, within ABZR87_RS03410at 713.061 kb on - strand, within ABZR87_RS03410at 713.100 kb on - strand, within ABZR87_RS03410at 713.100 kb on - strand, within ABZR87_RS03410at 713.105 kb on + strand, within ABZR87_RS03410at 713.105 kb on + strand, within ABZR87_RS03410at 713.105 kb on + strand, within ABZR87_RS03410at 713.106 kb on - strand, within ABZR87_RS03410at 713.106 kb on - strand, within ABZR87_RS03410at 713.106 kb on - strand, within ABZR87_RS03410at 713.142 kb on + strand, within ABZR87_RS03410at 713.210 kb on + strandat 713.210 kb on + strandat 713.210 kb on + strandat 713.210 kb on + strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.211 kb on - strandat 713.304 kb on + strand, within ABZR87_RS03415at 713.304 kb on + strand, within ABZR87_RS03415at 713.305 kb on - strand, within ABZR87_RS03415at 713.305 kb on - strand, within ABZR87_RS03415at 713.506 kb on + strand, within ABZR87_RS03415at 713.506 kb on + strand, within ABZR87_RS03415at 713.507 kb on - strand, within ABZR87_RS03415at 713.507 kb on - strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.588 kb on + strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.589 kb on - strand, within ABZR87_RS03415at 713.735 kb on + strandat 713.735 kb on + strandat 713.736 kb on - strandat 714.014 kb on + strand, within ABZR87_RS03420at 714.162 kb on + strandat 714.162 kb on + strandat 714.162 kb on + strandat 714.162 kb on + strandat 714.162 kb on + strandat 714.162 kb on + strandat 714.163 kb on - strandat 714.163 kb on - strandat 714.163 kb on - strandat 714.334 kb on + strand, within ABZR87_RS03425at 714.334 kb on + strand, within ABZR87_RS03425at 714.334 kb on + strand, within ABZR87_RS03425at 714.335 kb on - strand, within ABZR87_RS03425at 714.335 kb on - strand, within ABZR87_RS03425at 714.479 kb on - strand, within ABZR87_RS03425at 714.479 kb on - strand, within ABZR87_RS03425at 714.592 kb on + strand, within ABZR87_RS03425at 714.592 kb on + strand, within ABZR87_RS03425at 714.593 kb on - strand, within ABZR87_RS03425at 714.658 kb on + strand, within ABZR87_RS03425at 714.738 kb on + strand, within ABZR87_RS03425at 714.738 kb on + strand, within ABZR87_RS03425at 714.738 kb on + strand, within ABZR87_RS03425at 714.738 kb on + strand, within ABZR87_RS03425at 714.739 kb on - strand, within ABZR87_RS03425at 714.739 kb on - strand, within ABZR87_RS03425at 715.026 kb on + strand, within ABZR87_RS03430at 715.026 kb on + strand, within ABZR87_RS03430at 715.027 kb on - strand, within ABZR87_RS03430

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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712,850 - ABZR87_RS03410 0.23 -0.8
712,955 + ABZR87_RS03410 0.45 -3.7
712,955 + ABZR87_RS03410 0.45 +0.6
712,956 - ABZR87_RS03410 0.45 -2.3
712,956 - ABZR87_RS03410 0.45 -0.7
712,956 - ABZR87_RS03410 0.45 +0.5
712,956 - ABZR87_RS03410 0.45 -2.0
713,061 - ABZR87_RS03410 0.68 -2.8
713,061 - ABZR87_RS03410 0.68 -1.5
713,061 - ABZR87_RS03410 0.68 -1.7
713,100 - ABZR87_RS03410 0.76 -0.4
713,100 - ABZR87_RS03410 0.76 -1.3
713,105 + ABZR87_RS03410 0.77 -2.3
713,105 + ABZR87_RS03410 0.77 -2.3
713,105 + ABZR87_RS03410 0.77 -0.7
713,106 - ABZR87_RS03410 0.77 -2.3
713,106 - ABZR87_RS03410 0.77 -3.3
713,106 - ABZR87_RS03410 0.77 +0.7
713,142 + ABZR87_RS03410 0.85 +0.4
713,210 + +0.3
713,210 + -0.1
713,210 + -1.6
713,210 + +1.2
713,211 - -4.5
713,211 - -0.6
713,211 - -1.9
713,211 - -1.0
713,211 - -3.2
713,211 - +1.9
713,211 - -0.3
713,304 + ABZR87_RS03415 0.12 +1.1
713,304 + ABZR87_RS03415 0.12 +0.5
713,305 - ABZR87_RS03415 0.12 -0.0
713,305 - ABZR87_RS03415 0.12 -2.2
713,506 + ABZR87_RS03415 0.51 -3.3
713,506 + ABZR87_RS03415 0.51 -4.1
713,507 - ABZR87_RS03415 0.51 -0.3
713,507 - ABZR87_RS03415 0.51 +2.3
713,588 + ABZR87_RS03415 0.67 +0.4
713,588 + ABZR87_RS03415 0.67 -1.1
713,588 + ABZR87_RS03415 0.67 -1.0
713,588 + ABZR87_RS03415 0.67 -0.1
713,588 + ABZR87_RS03415 0.67 -0.4
713,588 + ABZR87_RS03415 0.67 +1.1
713,588 + ABZR87_RS03415 0.67 -1.3
713,588 + ABZR87_RS03415 0.67 -0.3
713,588 + ABZR87_RS03415 0.67 +1.4
713,588 + ABZR87_RS03415 0.67 -4.0
713,588 + ABZR87_RS03415 0.67 -2.7
713,588 + ABZR87_RS03415 0.67 +0.8
713,588 + ABZR87_RS03415 0.67 -1.0
713,588 + ABZR87_RS03415 0.67 -0.5
713,588 + ABZR87_RS03415 0.67 +1.3
713,589 - ABZR87_RS03415 0.67 -1.4
713,589 - ABZR87_RS03415 0.67 -0.8
713,589 - ABZR87_RS03415 0.67 +0.2
713,589 - ABZR87_RS03415 0.67 +0.2
713,589 - ABZR87_RS03415 0.67 -2.4
713,589 - ABZR87_RS03415 0.67 +0.8
713,589 - ABZR87_RS03415 0.67 -0.6
713,589 - ABZR87_RS03415 0.67 +0.6
713,589 - ABZR87_RS03415 0.67 +1.6
713,589 - ABZR87_RS03415 0.67 +1.6
713,735 + +0.4
713,735 + -0.7
713,736 - -1.4
714,014 + ABZR87_RS03420 0.63 -3.2
714,162 + -1.0
714,162 + -0.5
714,162 + -3.0
714,162 + -1.7
714,162 + +2.3
714,162 + +1.4
714,163 - -4.3
714,163 - +1.7
714,163 - +0.8
714,334 + ABZR87_RS03425 0.25 -1.9
714,334 + ABZR87_RS03425 0.25 -3.2
714,334 + ABZR87_RS03425 0.25 +0.2
714,335 - ABZR87_RS03425 0.26 -1.2
714,335 - ABZR87_RS03425 0.26 -2.9
714,479 - ABZR87_RS03425 0.45 -0.4
714,479 - ABZR87_RS03425 0.45 -0.1
714,592 + ABZR87_RS03425 0.60 +0.3
714,592 + ABZR87_RS03425 0.60 -0.4
714,593 - ABZR87_RS03425 0.60 +0.4
714,658 + ABZR87_RS03425 0.69 -2.9
714,738 + ABZR87_RS03425 0.80 +0.4
714,738 + ABZR87_RS03425 0.80 -2.3
714,738 + ABZR87_RS03425 0.80 +0.8
714,738 + ABZR87_RS03425 0.80 -1.3
714,739 - ABZR87_RS03425 0.80 -1.4
714,739 - ABZR87_RS03425 0.80 -1.2
715,026 + ABZR87_RS03430 0.13 -2.2
715,026 + ABZR87_RS03430 0.13 -0.2
715,027 - ABZR87_RS03430 0.13 +1.1

Or see this region's nucleotide sequence