Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02290 and ABZR87_RS02295 are separated by 189 nucleotides ABZR87_RS02295 and ABZR87_RS02300 are separated by 158 nucleotides ABZR87_RS02300 and ABZR87_RS02305 are separated by 9 nucleotides ABZR87_RS02305 and ABZR87_RS02310 overlap by 4 nucleotides
ABZR87_RS02290: ABZR87_RS02290 - glucans biosynthesis glucosyltransferase MdoH, at 489,850 to 492,438
_RS02290
ABZR87_RS02295: ABZR87_RS02295 - hypothetical protein, at 492,628 to 492,939
_RS02295
ABZR87_RS02300: ABZR87_RS02300 - aminoacyl-tRNA deacylase, at 493,098 to 493,586
_RS02300
ABZR87_RS02305: ABZR87_RS02305 - CDGSH iron-sulfur domain-containing protein, at 493,596 to 493,820
_RS02305
ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484
_RS02310
Position (kb) 493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 492.237 kb on + strand at 492.238 kb on - strand at 492.238 kb on - strand at 492.496 kb on + strand at 492.497 kb on - strand at 492.506 kb on + strand at 492.507 kb on - strand at 492.507 kb on - strand at 492.507 kb on - strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.521 kb on + strand at 492.522 kb on - strand at 492.522 kb on - strand at 492.522 kb on - strand at 492.522 kb on - strand at 492.522 kb on - strand at 492.525 kb on + strand at 492.526 kb on - strand at 492.526 kb on - strand at 492.526 kb on - strand at 492.526 kb on - strand at 492.526 kb on - strand at 492.526 kb on - strand at 492.551 kb on + strand at 492.551 kb on + strand at 492.551 kb on + strand at 492.551 kb on + strand at 492.551 kb on + strand at 492.551 kb on + strand at 492.552 kb on - strand at 492.552 kb on - strand at 492.552 kb on - strand at 492.552 kb on - strand at 492.552 kb on - strand at 492.552 kb on - strand at 492.573 kb on + strand at 492.573 kb on + strand at 492.573 kb on + strand at 492.574 kb on - strand at 492.574 kb on - strand at 492.726 kb on - strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.742 kb on + strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.743 kb on - strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.763 kb on + strand, within ABZR87_RS02295 at 492.764 kb on - strand, within ABZR87_RS02295 at 492.764 kb on - strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.784 kb on + strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.785 kb on - strand, within ABZR87_RS02295 at 492.802 kb on + strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.803 kb on - strand, within ABZR87_RS02295 at 492.823 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.832 kb on + strand, within ABZR87_RS02295 at 492.835 kb on + strand, within ABZR87_RS02295 at 492.851 kb on - strand, within ABZR87_RS02295 at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.038 kb on + strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.039 kb on - strand at 493.048 kb on + strand at 493.049 kb on - strand at 493.049 kb on - strand at 493.149 kb on + strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.150 kb on - strand, within ABZR87_RS02300 at 493.172 kb on + strand, within ABZR87_RS02300 at 493.172 kb on + strand, within ABZR87_RS02300 at 493.178 kb on + strand, within ABZR87_RS02300 at 493.178 kb on + strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.179 kb on - strand, within ABZR87_RS02300 at 493.237 kb on + strand, within ABZR87_RS02300 at 493.237 kb on + strand, within ABZR87_RS02300 at 493.261 kb on - strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.287 kb on + strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.288 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.417 kb on - strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.431 kb on + strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.432 kb on - strand, within ABZR87_RS02300 at 493.467 kb on + strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.468 kb on - strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.502 kb on + strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.503 kb on - strand, within ABZR87_RS02300 at 493.693 kb on + strand, within ABZR87_RS02305 at 493.694 kb on - strand, within ABZR87_RS02305 at 493.819 kb on - strand at 493.826 kb on - strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.896 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.906 kb on - strand at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.205 kb on + strand, within ABZR87_RS02310 at 494.206 kb on - strand, within ABZR87_RS02310 at 494.206 kb on - strand, within ABZR87_RS02310 at 494.316 kb on + strand, within ABZR87_RS02310 at 494.317 kb on - strand, within ABZR87_RS02310 at 494.317 kb on - strand, within ABZR87_RS02310 at 494.401 kb on + strand, within ABZR87_RS02310 at 494.401 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.487 kb on + strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310 at 494.488 kb on - strand, within ABZR87_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 492,237 + -3.3 492,238 - +0.3 492,238 - -0.1 492,496 + +0.7 492,497 - +0.4 492,506 + +0.7 492,507 - +1.9 492,507 - -1.7 492,507 - +0.2 492,521 + +0.4 492,521 + -2.6 492,521 + -1.0 492,521 + -0.4 492,521 + +0.1 492,521 + +2.2 492,521 + -3.7 492,522 - +0.8 492,522 - +0.8 492,522 - -0.2 492,522 - -4.0 492,522 - -1.0 492,525 + -0.5 492,526 - +1.7 492,526 - -0.9 492,526 - -0.1 492,526 - +1.0 492,526 - +0.9 492,526 - +3.3 492,551 + -0.3 492,551 + -3.0 492,551 + +0.7 492,551 + +0.5 492,551 + +0.7 492,551 + +0.6 492,552 - +0.4 492,552 - -3.2 492,552 - +0.9 492,552 - -3.4 492,552 - -1.2 492,552 - +1.3 492,573 + +0.7 492,573 + +0.7 492,573 + +2.0 492,574 - -1.6 492,574 - -1.5 492,726 - ABZR87_RS02295 0.31 +2.7 492,742 + ABZR87_RS02295 0.37 -0.5 492,742 + ABZR87_RS02295 0.37 +1.8 492,742 + ABZR87_RS02295 0.37 -0.1 492,742 + ABZR87_RS02295 0.37 -0.3 492,742 + ABZR87_RS02295 0.37 +1.6 492,743 - ABZR87_RS02295 0.37 +0.8 492,743 - ABZR87_RS02295 0.37 +1.0 492,743 - ABZR87_RS02295 0.37 -3.2 492,743 - ABZR87_RS02295 0.37 +0.2 492,763 + ABZR87_RS02295 0.43 +0.2 492,763 + ABZR87_RS02295 0.43 +1.5 492,763 + ABZR87_RS02295 0.43 -0.1 492,764 - ABZR87_RS02295 0.44 -0.2 492,764 - ABZR87_RS02295 0.44 -2.6 492,784 + ABZR87_RS02295 0.50 -1.9 492,784 + ABZR87_RS02295 0.50 +0.3 492,784 + ABZR87_RS02295 0.50 -0.2 492,785 - ABZR87_RS02295 0.50 +0.2 492,785 - ABZR87_RS02295 0.50 -3.2 492,785 - ABZR87_RS02295 0.50 +0.2 492,802 + ABZR87_RS02295 0.56 -2.2 492,803 - ABZR87_RS02295 0.56 -1.6 492,803 - ABZR87_RS02295 0.56 +1.6 492,803 - ABZR87_RS02295 0.56 -1.7 492,823 + ABZR87_RS02295 0.62 +0.5 492,832 + ABZR87_RS02295 0.65 +0.8 492,832 + ABZR87_RS02295 0.65 -0.9 492,832 + ABZR87_RS02295 0.65 -2.6 492,835 + ABZR87_RS02295 0.66 +2.1 492,851 - ABZR87_RS02295 0.71 +1.7 493,038 + -0.4 493,038 + -1.3 493,038 + -0.5 493,038 + -1.5 493,038 + -0.7 493,038 + -1.1 493,038 + +0.7 493,038 + -1.6 493,038 + +1.0 493,038 + -0.7 493,038 + -0.0 493,038 + +2.5 493,038 + +0.7 493,039 - +0.9 493,039 - +0.4 493,039 - -1.5 493,039 - +0.1 493,039 - +0.4 493,039 - +1.1 493,048 + +0.8 493,049 - +1.9 493,049 - +1.1 493,149 + ABZR87_RS02300 0.10 -4.2 493,150 - ABZR87_RS02300 0.11 -0.7 493,150 - ABZR87_RS02300 0.11 -4.0 493,150 - ABZR87_RS02300 0.11 -0.6 493,150 - ABZR87_RS02300 0.11 +1.1 493,172 + ABZR87_RS02300 0.15 +0.7 493,172 + ABZR87_RS02300 0.15 -2.3 493,178 + ABZR87_RS02300 0.16 +1.8 493,178 + ABZR87_RS02300 0.16 +1.8 493,179 - ABZR87_RS02300 0.17 +0.3 493,179 - ABZR87_RS02300 0.17 -3.3 493,179 - ABZR87_RS02300 0.17 +0.1 493,237 + ABZR87_RS02300 0.28 +0.6 493,237 + ABZR87_RS02300 0.28 +1.1 493,261 - ABZR87_RS02300 0.33 +1.4 493,287 + ABZR87_RS02300 0.39 +2.3 493,287 + ABZR87_RS02300 0.39 -1.9 493,287 + ABZR87_RS02300 0.39 +0.6 493,287 + ABZR87_RS02300 0.39 -0.2 493,287 + ABZR87_RS02300 0.39 +0.6 493,287 + ABZR87_RS02300 0.39 -2.8 493,287 + ABZR87_RS02300 0.39 -1.7 493,288 - ABZR87_RS02300 0.39 -0.3 493,288 - ABZR87_RS02300 0.39 -3.8 493,288 - ABZR87_RS02300 0.39 +1.6 493,288 - ABZR87_RS02300 0.39 -3.6 493,288 - ABZR87_RS02300 0.39 -0.5 493,417 - ABZR87_RS02300 0.65 -2.7 493,417 - ABZR87_RS02300 0.65 -0.7 493,417 - ABZR87_RS02300 0.65 -3.3 493,431 + ABZR87_RS02300 0.68 -2.0 493,431 + ABZR87_RS02300 0.68 -0.3 493,431 + ABZR87_RS02300 0.68 +0.7 493,431 + ABZR87_RS02300 0.68 -0.9 493,432 - ABZR87_RS02300 0.68 -0.1 493,432 - ABZR87_RS02300 0.68 +0.8 493,432 - ABZR87_RS02300 0.68 +1.1 493,432 - ABZR87_RS02300 0.68 -0.5 493,432 - ABZR87_RS02300 0.68 +0.1 493,467 + ABZR87_RS02300 0.75 -2.7 493,468 - ABZR87_RS02300 0.76 +0.7 493,468 - ABZR87_RS02300 0.76 -0.4 493,468 - ABZR87_RS02300 0.76 +0.6 493,468 - ABZR87_RS02300 0.76 -0.0 493,502 + ABZR87_RS02300 0.83 -0.6 493,502 + ABZR87_RS02300 0.83 +0.3 493,502 + ABZR87_RS02300 0.83 +0.5 493,503 - ABZR87_RS02300 0.83 -2.4 493,503 - ABZR87_RS02300 0.83 +2.0 493,503 - ABZR87_RS02300 0.83 -2.9 493,503 - ABZR87_RS02300 0.83 -3.2 493,503 - ABZR87_RS02300 0.83 +0.3 493,503 - ABZR87_RS02300 0.83 -0.4 493,503 - ABZR87_RS02300 0.83 -1.6 493,503 - ABZR87_RS02300 0.83 +1.7 493,693 + ABZR87_RS02305 0.43 +1.6 493,694 - ABZR87_RS02305 0.44 +1.4 493,819 - +0.4 493,826 - +0.6 493,896 + +1.0 493,896 + +2.0 493,896 + +0.1 493,896 + -2.5 493,896 + +0.4 493,905 + +0.9 493,906 - -2.9 493,906 - -3.2 494,205 + ABZR87_RS02310 0.23 +1.0 494,205 + ABZR87_RS02310 0.23 -3.6 494,205 + ABZR87_RS02310 0.23 -0.9 494,205 + ABZR87_RS02310 0.23 +0.9 494,205 + ABZR87_RS02310 0.23 +1.1 494,206 - ABZR87_RS02310 0.23 +0.5 494,206 - ABZR87_RS02310 0.23 -3.0 494,316 + ABZR87_RS02310 0.30 +0.2 494,317 - ABZR87_RS02310 0.30 +0.5 494,317 - ABZR87_RS02310 0.30 +0.6 494,401 + ABZR87_RS02310 0.35 -2.8 494,401 + ABZR87_RS02310 0.35 +0.2 494,487 + ABZR87_RS02310 0.40 +0.6 494,487 + ABZR87_RS02310 0.40 -3.7 494,487 + ABZR87_RS02310 0.40 -0.4 494,487 + ABZR87_RS02310 0.40 -0.8 494,487 + ABZR87_RS02310 0.40 +0.3 494,488 - ABZR87_RS02310 0.40 -0.4 494,488 - ABZR87_RS02310 0.40 -0.4 494,488 - ABZR87_RS02310 0.40 -0.9 494,488 - ABZR87_RS02310 0.40 +1.5 494,488 - ABZR87_RS02310 0.40 -2.0
Or see this region's nucleotide sequence