Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01755 and ABZR87_RS01760 overlap by 4 nucleotides ABZR87_RS01760 and ABZR87_RS01765 are separated by 45 nucleotides
ABZR87_RS01755: ABZR87_RS01755 - ATP-binding protein, at 373,703 to 375,742
_RS01755
ABZR87_RS01760: ABZR87_RS01760 - PP0621 family protein, at 375,739 to 376,005
_RS01760
ABZR87_RS01765: ABZR87_RS01765 - cytochrome c biogenesis protein CcsA, at 376,051 to 376,962
_RS01765
Position (kb) 375
376
377 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 375.039 kb on + strand, within ABZR87_RS01755 at 375.039 kb on + strand, within ABZR87_RS01755 at 375.135 kb on + strand, within ABZR87_RS01755 at 375.135 kb on + strand, within ABZR87_RS01755 at 375.135 kb on + strand, within ABZR87_RS01755 at 375.135 kb on + strand, within ABZR87_RS01755 at 375.135 kb on + strand, within ABZR87_RS01755 at 375.136 kb on - strand, within ABZR87_RS01755 at 375.136 kb on - strand, within ABZR87_RS01755 at 375.136 kb on - strand, within ABZR87_RS01755 at 375.136 kb on - strand, within ABZR87_RS01755 at 375.159 kb on + strand, within ABZR87_RS01755 at 375.159 kb on + strand, within ABZR87_RS01755 at 375.159 kb on + strand, within ABZR87_RS01755 at 375.159 kb on + strand, within ABZR87_RS01755 at 375.160 kb on - strand, within ABZR87_RS01755 at 375.160 kb on - strand, within ABZR87_RS01755 at 375.160 kb on - strand, within ABZR87_RS01755 at 375.160 kb on - strand, within ABZR87_RS01755 at 375.160 kb on - strand, within ABZR87_RS01755 at 375.171 kb on + strand, within ABZR87_RS01755 at 375.171 kb on + strand, within ABZR87_RS01755 at 375.172 kb on - strand, within ABZR87_RS01755 at 375.366 kb on + strand, within ABZR87_RS01755 at 375.366 kb on + strand, within ABZR87_RS01755 at 375.366 kb on + strand, within ABZR87_RS01755 at 375.366 kb on + strand, within ABZR87_RS01755 at 375.366 kb on + strand, within ABZR87_RS01755 at 375.367 kb on - strand, within ABZR87_RS01755 at 375.367 kb on - strand, within ABZR87_RS01755 at 375.477 kb on + strand, within ABZR87_RS01755 at 375.478 kb on - strand, within ABZR87_RS01755 at 375.600 kb on + strand at 375.600 kb on + strand at 375.601 kb on - strand at 375.830 kb on - strand, within ABZR87_RS01760 at 376.026 kb on + strand at 376.027 kb on - strand at 376.027 kb on - strand at 376.027 kb on - strand at 376.027 kb on - strand at 376.027 kb on - strand at 376.052 kb on + strand at 376.097 kb on + strand at 376.098 kb on - strand at 376.098 kb on - strand at 376.478 kb on + strand, within ABZR87_RS01765 at 376.478 kb on + strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.530 kb on - strand, within ABZR87_RS01765 at 376.682 kb on + strand, within ABZR87_RS01765 at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.946 kb on + strand at 376.947 kb on - strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.951 kb on + strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand at 376.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 375,039 + ABZR87_RS01755 0.65 +1.2 375,039 + ABZR87_RS01755 0.65 +1.8 375,135 + ABZR87_RS01755 0.70 +1.6 375,135 + ABZR87_RS01755 0.70 -2.7 375,135 + ABZR87_RS01755 0.70 +0.3 375,135 + ABZR87_RS01755 0.70 -1.0 375,135 + ABZR87_RS01755 0.70 +0.5 375,136 - ABZR87_RS01755 0.70 -0.2 375,136 - ABZR87_RS01755 0.70 +1.9 375,136 - ABZR87_RS01755 0.70 -0.6 375,136 - ABZR87_RS01755 0.70 -4.0 375,159 + ABZR87_RS01755 0.71 -0.7 375,159 + ABZR87_RS01755 0.71 +0.6 375,159 + ABZR87_RS01755 0.71 +1.2 375,159 + ABZR87_RS01755 0.71 +1.6 375,160 - ABZR87_RS01755 0.71 +1.9 375,160 - ABZR87_RS01755 0.71 +0.5 375,160 - ABZR87_RS01755 0.71 -0.3 375,160 - ABZR87_RS01755 0.71 +1.0 375,160 - ABZR87_RS01755 0.71 -2.6 375,171 + ABZR87_RS01755 0.72 +0.6 375,171 + ABZR87_RS01755 0.72 +1.9 375,172 - ABZR87_RS01755 0.72 +0.0 375,366 + ABZR87_RS01755 0.82 -0.8 375,366 + ABZR87_RS01755 0.82 +1.2 375,366 + ABZR87_RS01755 0.82 +1.4 375,366 + ABZR87_RS01755 0.82 -0.5 375,366 + ABZR87_RS01755 0.82 +0.5 375,367 - ABZR87_RS01755 0.82 +0.6 375,367 - ABZR87_RS01755 0.82 +1.1 375,477 + ABZR87_RS01755 0.87 +0.8 375,478 - ABZR87_RS01755 0.87 +0.1 375,600 + -0.5 375,600 + +0.5 375,601 - +0.7 375,830 - ABZR87_RS01760 0.34 -3.5 376,026 + +1.2 376,027 - -1.0 376,027 - -0.6 376,027 - -0.7 376,027 - -2.6 376,027 - -3.5 376,052 + -2.2 376,097 + -1.4 376,098 - +1.8 376,098 - -3.0 376,478 + ABZR87_RS01765 0.47 -0.8 376,478 + ABZR87_RS01765 0.47 -2.2 376,530 - ABZR87_RS01765 0.53 -1.9 376,530 - ABZR87_RS01765 0.53 +0.3 376,682 + ABZR87_RS01765 0.69 -4.3 376,925 + +1.5 376,926 - -4.5 376,926 - -0.9 376,926 - +0.5 376,946 + -0.9 376,946 + +0.6 376,946 + -2.8 376,946 + -3.0 376,947 - -2.4 376,951 + -1.6 376,951 + -1.3 376,951 + -0.0 376,952 - -1.3 376,952 - -3.6 376,952 - -1.6 376,952 - +0.8 376,952 - +0.9 376,952 - -1.8
Or see this region's nucleotide sequence