Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01010 and ABZR87_RS01015 are separated by 56 nucleotides ABZR87_RS01015 and ABZR87_RS01020 overlap by 8 nucleotides ABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotides
ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552
_RS01010
ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844
_RS01015
ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814
_RS01020
ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373
_RS01025
Position (kb) 201
202
203 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 201.570 kb on - strand at 201.582 kb on + strand at 201.582 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.584 kb on + strand at 201.585 kb on - strand at 201.585 kb on - strand at 201.585 kb on - strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.610 kb on + strand at 201.611 kb on - strand at 201.611 kb on - strand at 201.667 kb on + strand at 201.667 kb on + strand at 201.667 kb on + strand at 201.867 kb on - strand, within ABZR87_RS01015 at 201.867 kb on - strand, within ABZR87_RS01015 at 201.955 kb on + strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 201.956 kb on - strand, within ABZR87_RS01015 at 202.257 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.261 kb on + strand, within ABZR87_RS01015 at 202.262 kb on - strand, within ABZR87_RS01015 at 202.262 kb on - strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.549 kb on + strand, within ABZR87_RS01015 at 202.601 kb on - strand, within ABZR87_RS01015 at 203.090 kb on + strand, within ABZR87_RS01020 at 203.091 kb on - strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.228 kb on + strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.229 kb on - strand, within ABZR87_RS01020 at 203.252 kb on + strand, within ABZR87_RS01020 at 203.252 kb on + strand, within ABZR87_RS01020 at 203.253 kb on - strand, within ABZR87_RS01020 at 203.341 kb on + strand, within ABZR87_RS01020 at 203.370 kb on + strand, within ABZR87_RS01020
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 201,570 - +1.7 201,582 + -0.9 201,582 + +0.8 201,584 + -0.8 201,584 + +0.8 201,584 + -3.0 201,584 + -0.7 201,585 - -0.7 201,585 - +0.1 201,585 - +0.5 201,610 + -2.6 201,610 + -0.8 201,610 + -4.1 201,610 + -0.5 201,611 - +0.7 201,611 - +1.3 201,667 + -2.1 201,667 + -0.5 201,667 + -1.6 201,867 - ABZR87_RS01015 0.21 +0.9 201,867 - ABZR87_RS01015 0.21 -0.1 201,955 + ABZR87_RS01015 0.28 -1.3 201,956 - ABZR87_RS01015 0.28 -1.5 201,956 - ABZR87_RS01015 0.28 +0.4 201,956 - ABZR87_RS01015 0.28 -0.8 201,956 - ABZR87_RS01015 0.28 -0.8 201,956 - ABZR87_RS01015 0.28 -1.0 202,257 + ABZR87_RS01015 0.52 +1.0 202,261 + ABZR87_RS01015 0.53 -0.1 202,261 + ABZR87_RS01015 0.53 -2.6 202,261 + ABZR87_RS01015 0.53 +0.6 202,261 + ABZR87_RS01015 0.53 +1.0 202,261 + ABZR87_RS01015 0.53 -1.6 202,261 + ABZR87_RS01015 0.53 -3.0 202,261 + ABZR87_RS01015 0.53 -1.2 202,261 + ABZR87_RS01015 0.53 -0.7 202,261 + ABZR87_RS01015 0.53 +0.4 202,261 + ABZR87_RS01015 0.53 +2.4 202,262 - ABZR87_RS01015 0.53 +0.9 202,262 - ABZR87_RS01015 0.53 +1.1 202,549 + ABZR87_RS01015 0.76 -0.4 202,549 + ABZR87_RS01015 0.76 -2.7 202,549 + ABZR87_RS01015 0.76 -3.9 202,549 + ABZR87_RS01015 0.76 -0.7 202,601 - ABZR87_RS01015 0.80 +1.1 203,090 + ABZR87_RS01020 0.26 -1.5 203,091 - ABZR87_RS01020 0.26 +0.0 203,228 + ABZR87_RS01020 0.40 +0.6 203,228 + ABZR87_RS01020 0.40 -2.3 203,228 + ABZR87_RS01020 0.40 +1.7 203,229 - ABZR87_RS01020 0.40 +2.0 203,229 - ABZR87_RS01020 0.40 +0.1 203,229 - ABZR87_RS01020 0.40 -0.1 203,252 + ABZR87_RS01020 0.42 -2.8 203,252 + ABZR87_RS01020 0.42 -0.2 203,253 - ABZR87_RS01020 0.43 +0.0 203,341 + ABZR87_RS01020 0.52 +1.1 203,370 + ABZR87_RS01020 0.54 -0.8
Or see this region's nucleotide sequence