Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00795 and ABZR87_RS00800 are separated by 20 nucleotides ABZR87_RS00800 and ABZR87_RS00805 are separated by 70 nucleotides ABZR87_RS00805 and ABZR87_RS00810 overlap by 4 nucleotides
ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494
_RS00795
ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006
_RS00800
ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700
_RS00805
ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713
_RS00810
Position (kb) 161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.273 kb on + strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.274 kb on - strand, within ABZR87_RS00795 at 160.288 kb on + strand, within ABZR87_RS00795 at 160.289 kb on - strand, within ABZR87_RS00795 at 160.432 kb on + strand at 160.432 kb on + strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.433 kb on - strand at 160.501 kb on + strand at 160.502 kb on - strand at 160.502 kb on - strand at 160.515 kb on - strand at 160.584 kb on - strand, within ABZR87_RS00800 at 160.596 kb on + strand, within ABZR87_RS00800 at 160.596 kb on + strand, within ABZR87_RS00800 at 160.596 kb on + strand, within ABZR87_RS00800 at 160.596 kb on + strand, within ABZR87_RS00800 at 160.597 kb on - strand, within ABZR87_RS00800 at 160.597 kb on - strand, within ABZR87_RS00800 at 160.597 kb on - strand, within ABZR87_RS00800 at 160.597 kb on - strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.602 kb on + strand, within ABZR87_RS00800 at 160.603 kb on - strand, within ABZR87_RS00800 at 160.603 kb on - strand, within ABZR87_RS00800 at 160.603 kb on - strand, within ABZR87_RS00800 at 160.603 kb on - strand, within ABZR87_RS00800 at 160.603 kb on - strand, within ABZR87_RS00800 at 160.620 kb on - strand, within ABZR87_RS00800 at 160.818 kb on + strand, within ABZR87_RS00800 at 160.819 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.906 kb on - strand, within ABZR87_RS00800 at 161.045 kb on - strand at 161.045 kb on - strand at 161.698 kb on + strand at 161.698 kb on + strand at 161.699 kb on - strand at 162.104 kb on + strand, within ABZR87_RS00810 at 162.104 kb on + strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.668 kb on + strand at 162.668 kb on + strand at 162.669 kb on - strand at 162.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 160,273 + ABZR87_RS00795 0.76 -1.5 160,273 + ABZR87_RS00795 0.76 -0.1 160,274 - ABZR87_RS00795 0.76 +0.1 160,274 - ABZR87_RS00795 0.76 -1.9 160,288 + ABZR87_RS00795 0.78 -0.6 160,289 - ABZR87_RS00795 0.78 -0.2 160,432 + -0.5 160,432 + -1.5 160,433 - -1.5 160,433 - -1.8 160,433 - -2.1 160,433 - +0.3 160,433 - +0.1 160,501 + +0.4 160,502 - -3.4 160,502 - +0.0 160,515 - -0.9 160,584 - ABZR87_RS00800 0.14 +0.9 160,596 + ABZR87_RS00800 0.16 -2.2 160,596 + ABZR87_RS00800 0.16 -3.0 160,596 + ABZR87_RS00800 0.16 -3.4 160,596 + ABZR87_RS00800 0.16 +0.1 160,597 - ABZR87_RS00800 0.17 -0.8 160,597 - ABZR87_RS00800 0.17 -0.3 160,597 - ABZR87_RS00800 0.17 +1.2 160,597 - ABZR87_RS00800 0.17 -2.1 160,602 + ABZR87_RS00800 0.18 -3.7 160,602 + ABZR87_RS00800 0.18 -0.4 160,602 + ABZR87_RS00800 0.18 +0.8 160,602 + ABZR87_RS00800 0.18 -2.6 160,602 + ABZR87_RS00800 0.18 -1.4 160,602 + ABZR87_RS00800 0.18 +0.6 160,603 - ABZR87_RS00800 0.18 -1.9 160,603 - ABZR87_RS00800 0.18 -0.1 160,603 - ABZR87_RS00800 0.18 -1.7 160,603 - ABZR87_RS00800 0.18 +0.3 160,603 - ABZR87_RS00800 0.18 +0.1 160,620 - ABZR87_RS00800 0.21 -1.6 160,818 + ABZR87_RS00800 0.62 +1.1 160,819 - ABZR87_RS00800 0.62 +1.5 160,870 - ABZR87_RS00800 0.72 +1.5 160,870 - ABZR87_RS00800 0.72 +1.0 160,870 - ABZR87_RS00800 0.72 +0.3 160,905 + ABZR87_RS00800 0.79 -3.3 160,905 + ABZR87_RS00800 0.79 +1.4 160,905 + ABZR87_RS00800 0.79 -1.4 160,906 - ABZR87_RS00800 0.79 +1.0 161,045 - -3.2 161,045 - +0.4 161,698 + +2.7 161,698 + -2.8 161,699 - -3.2 162,104 + ABZR87_RS00810 0.40 -2.5 162,104 + ABZR87_RS00810 0.40 +0.4 162,105 - ABZR87_RS00810 0.40 +1.4 162,105 - ABZR87_RS00810 0.40 +0.5 162,373 + ABZR87_RS00810 0.66 +1.9 162,373 + ABZR87_RS00810 0.66 +0.7 162,668 + +0.1 162,668 + -1.3 162,669 - -2.0 162,669 - -3.8
Or see this region's nucleotide sequence