Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00795

Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00785 and ABZR87_RS00790 are separated by 62 nucleotidesABZR87_RS00790 and ABZR87_RS00795 overlap by 4 nucleotidesABZR87_RS00795 and ABZR87_RS00800 are separated by 20 nucleotidesABZR87_RS00800 and ABZR87_RS00805 are separated by 70 nucleotides ABZR87_RS00785: ABZR87_RS00785 - tripartite tricarboxylate transporter substrate binding protein BugE, at 158,064 to 159,023 _RS00785 ABZR87_RS00790: ABZR87_RS00790 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 159,086 to 159,562 _RS00790 ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494 _RS00795 ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006 _RS00800 ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700 _RS00805 Position (kb) 159 160 161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 158.802 kb on + strand, within ABZR87_RS00785at 158.802 kb on + strand, within ABZR87_RS00785at 158.803 kb on - strand, within ABZR87_RS00785at 158.803 kb on - strand, within ABZR87_RS00785at 158.934 kb on - strandat 158.934 kb on - strandat 158.934 kb on - strandat 158.946 kb on + strandat 158.946 kb on + strandat 158.947 kb on - strandat 159.021 kb on + strandat 159.048 kb on + strandat 159.049 kb on - strandat 159.049 kb on - strandat 159.173 kb on + strand, within ABZR87_RS00790at 159.174 kb on - strand, within ABZR87_RS00790at 159.248 kb on + strand, within ABZR87_RS00790at 159.248 kb on + strand, within ABZR87_RS00790at 159.249 kb on - strand, within ABZR87_RS00790at 159.251 kb on + strand, within ABZR87_RS00790at 159.251 kb on + strand, within ABZR87_RS00790at 159.251 kb on + strand, within ABZR87_RS00790at 159.252 kb on - strand, within ABZR87_RS00790at 159.252 kb on - strand, within ABZR87_RS00790at 159.252 kb on - strand, within ABZR87_RS00790at 159.252 kb on - strand, within ABZR87_RS00790at 159.252 kb on - strand, within ABZR87_RS00790at 159.319 kb on - strand, within ABZR87_RS00790at 159.319 kb on - strand, within ABZR87_RS00790at 159.362 kb on + strand, within ABZR87_RS00790at 159.362 kb on + strand, within ABZR87_RS00790at 159.363 kb on - strand, within ABZR87_RS00790at 159.363 kb on - strand, within ABZR87_RS00790at 159.506 kb on + strand, within ABZR87_RS00790at 159.507 kb on - strand, within ABZR87_RS00790at 159.507 kb on - strand, within ABZR87_RS00790at 159.558 kb on + strandat 159.558 kb on + strandat 159.558 kb on + strandat 159.559 kb on - strandat 159.673 kb on - strand, within ABZR87_RS00795at 159.707 kb on - strand, within ABZR87_RS00795at 159.772 kb on + strand, within ABZR87_RS00795at 159.772 kb on + strand, within ABZR87_RS00795at 159.826 kb on - strand, within ABZR87_RS00795at 160.025 kb on - strand, within ABZR87_RS00795at 160.025 kb on - strand, within ABZR87_RS00795at 160.025 kb on - strand, within ABZR87_RS00795at 160.273 kb on + strand, within ABZR87_RS00795at 160.273 kb on + strand, within ABZR87_RS00795at 160.274 kb on - strand, within ABZR87_RS00795at 160.274 kb on - strand, within ABZR87_RS00795at 160.288 kb on + strand, within ABZR87_RS00795at 160.289 kb on - strand, within ABZR87_RS00795at 160.432 kb on + strandat 160.432 kb on + strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.501 kb on + strandat 160.502 kb on - strandat 160.502 kb on - strandat 160.515 kb on - strandat 160.584 kb on - strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.620 kb on - strand, within ABZR87_RS00800at 160.818 kb on + strand, within ABZR87_RS00800at 160.819 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.906 kb on - strand, within ABZR87_RS00800at 161.045 kb on - strandat 161.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB
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158,802 + ABZR87_RS00785 0.77 +1.4
158,802 + ABZR87_RS00785 0.77 -0.9
158,803 - ABZR87_RS00785 0.77 -2.4
158,803 - ABZR87_RS00785 0.77 +1.1
158,934 - -1.5
158,934 - -0.6
158,934 - +1.8
158,946 + -2.8
158,946 + -4.3
158,947 - +1.5
159,021 + -3.9
159,048 + -0.3
159,049 - -2.1
159,049 - -0.1
159,173 + ABZR87_RS00790 0.18 -0.6
159,174 - ABZR87_RS00790 0.18 +0.6
159,248 + ABZR87_RS00790 0.34 +1.7
159,248 + ABZR87_RS00790 0.34 +0.2
159,249 - ABZR87_RS00790 0.34 +2.2
159,251 + ABZR87_RS00790 0.35 +2.0
159,251 + ABZR87_RS00790 0.35 -0.5
159,251 + ABZR87_RS00790 0.35 -0.1
159,252 - ABZR87_RS00790 0.35 -0.6
159,252 - ABZR87_RS00790 0.35 +1.4
159,252 - ABZR87_RS00790 0.35 +1.5
159,252 - ABZR87_RS00790 0.35 +1.0
159,252 - ABZR87_RS00790 0.35 +0.8
159,319 - ABZR87_RS00790 0.49 -0.8
159,319 - ABZR87_RS00790 0.49 +1.0
159,362 + ABZR87_RS00790 0.58 -0.8
159,362 + ABZR87_RS00790 0.58 -3.4
159,363 - ABZR87_RS00790 0.58 +1.2
159,363 - ABZR87_RS00790 0.58 -0.2
159,506 + ABZR87_RS00790 0.88 -1.9
159,507 - ABZR87_RS00790 0.88 -3.5
159,507 - ABZR87_RS00790 0.88 +0.8
159,558 + -0.9
159,558 + +1.4
159,558 + +0.6
159,559 - -0.5
159,673 - ABZR87_RS00795 0.12 -1.8
159,707 - ABZR87_RS00795 0.16 +1.1
159,772 + ABZR87_RS00795 0.23 -0.6
159,772 + ABZR87_RS00795 0.23 -0.2
159,826 - ABZR87_RS00795 0.29 -0.5
160,025 - ABZR87_RS00795 0.50 +0.3
160,025 - ABZR87_RS00795 0.50 -2.0
160,025 - ABZR87_RS00795 0.50 -2.4
160,273 + ABZR87_RS00795 0.76 -1.5
160,273 + ABZR87_RS00795 0.76 -0.1
160,274 - ABZR87_RS00795 0.76 +0.1
160,274 - ABZR87_RS00795 0.76 -1.9
160,288 + ABZR87_RS00795 0.78 -0.6
160,289 - ABZR87_RS00795 0.78 -0.2
160,432 + -0.5
160,432 + -1.5
160,433 - -1.5
160,433 - -1.8
160,433 - -2.1
160,433 - +0.3
160,433 - +0.1
160,501 + +0.4
160,502 - -3.4
160,502 - +0.0
160,515 - -0.9
160,584 - ABZR87_RS00800 0.14 +0.9
160,596 + ABZR87_RS00800 0.16 -2.2
160,596 + ABZR87_RS00800 0.16 -3.0
160,596 + ABZR87_RS00800 0.16 -3.4
160,596 + ABZR87_RS00800 0.16 +0.1
160,597 - ABZR87_RS00800 0.17 -0.8
160,597 - ABZR87_RS00800 0.17 -0.3
160,597 - ABZR87_RS00800 0.17 +1.2
160,597 - ABZR87_RS00800 0.17 -2.1
160,602 + ABZR87_RS00800 0.18 -3.7
160,602 + ABZR87_RS00800 0.18 -0.4
160,602 + ABZR87_RS00800 0.18 +0.8
160,602 + ABZR87_RS00800 0.18 -2.6
160,602 + ABZR87_RS00800 0.18 -1.4
160,602 + ABZR87_RS00800 0.18 +0.6
160,603 - ABZR87_RS00800 0.18 -1.9
160,603 - ABZR87_RS00800 0.18 -0.1
160,603 - ABZR87_RS00800 0.18 -1.7
160,603 - ABZR87_RS00800 0.18 +0.3
160,603 - ABZR87_RS00800 0.18 +0.1
160,620 - ABZR87_RS00800 0.21 -1.6
160,818 + ABZR87_RS00800 0.62 +1.1
160,819 - ABZR87_RS00800 0.62 +1.5
160,870 - ABZR87_RS00800 0.72 +1.5
160,870 - ABZR87_RS00800 0.72 +1.0
160,870 - ABZR87_RS00800 0.72 +0.3
160,905 + ABZR87_RS00800 0.79 -3.3
160,905 + ABZR87_RS00800 0.79 +1.4
160,905 + ABZR87_RS00800 0.79 -1.4
160,906 - ABZR87_RS00800 0.79 +1.0
161,045 - -3.2
161,045 - +0.4

Or see this region's nucleotide sequence