Experiment: rhizosphere EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00255 and ABZR87_RS00260 are separated by 243 nucleotides ABZR87_RS00260 and ABZR87_RS00265 are separated by 4 nucleotides
ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815
_RS00255
ABZR87_RS00260: ABZR87_RS00260 - MarR family winged helix-turn-helix transcriptional regulator, at 52,059 to 52,496
_RS00260
ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318
_RS00265
Position (kb) 52
53 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.605 kb on - strand, within ABZR87_RS00255 at 51.866 kb on + strand at 51.866 kb on + strand at 51.866 kb on + strand at 51.867 kb on - strand at 52.014 kb on - strand at 52.022 kb on + strand at 52.029 kb on - strand at 52.049 kb on + strand at 52.049 kb on + strand at 52.188 kb on + strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.341 kb on - strand, within ABZR87_RS00260 at 52.494 kb on + strand at 52.494 kb on + strand at 52.494 kb on + strand at 52.495 kb on - strand at 52.495 kb on - strand at 52.495 kb on - strand at 52.698 kb on + strand, within ABZR87_RS00265 at 52.699 kb on - strand, within ABZR87_RS00265 at 52.699 kb on - strand, within ABZR87_RS00265 at 53.278 kb on + strand, within ABZR87_RS00265 at 53.279 kb on - strand, within ABZR87_RS00265 at 53.279 kb on - strand, within ABZR87_RS00265 at 53.279 kb on - strand, within ABZR87_RS00265 at 53.279 kb on - strand, within ABZR87_RS00265 at 53.366 kb on - strand, within ABZR87_RS00265 at 53.395 kb on + strand, within ABZR87_RS00265 at 53.396 kb on - strand, within ABZR87_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 1; outgrowth in LB remove 51,115 + ABZR87_RS00255 0.26 -3.4 51,115 + ABZR87_RS00255 0.26 +0.4 51,115 + ABZR87_RS00255 0.26 +1.1 51,116 - ABZR87_RS00255 0.26 +1.4 51,116 - ABZR87_RS00255 0.26 +0.8 51,327 + ABZR87_RS00255 0.48 -2.0 51,327 + ABZR87_RS00255 0.48 +0.3 51,604 + ABZR87_RS00255 0.78 -0.3 51,604 + ABZR87_RS00255 0.78 +0.8 51,604 + ABZR87_RS00255 0.78 +1.0 51,605 - ABZR87_RS00255 0.78 +0.6 51,866 + +1.1 51,866 + +1.5 51,866 + -0.7 51,867 - -0.5 52,014 - -1.1 52,022 + +1.3 52,029 - +0.8 52,049 + +0.9 52,049 + +0.9 52,188 + ABZR87_RS00260 0.29 -2.3 52,189 - ABZR87_RS00260 0.30 -4.4 52,189 - ABZR87_RS00260 0.30 -3.3 52,189 - ABZR87_RS00260 0.30 +0.4 52,341 - ABZR87_RS00260 0.64 -0.8 52,494 + +0.2 52,494 + +1.1 52,494 + +2.2 52,495 - -0.6 52,495 - -2.6 52,495 - -0.2 52,698 + ABZR87_RS00265 0.11 +0.1 52,699 - ABZR87_RS00265 0.11 -0.6 52,699 - ABZR87_RS00265 0.11 -2.9 53,278 + ABZR87_RS00265 0.43 -2.5 53,279 - ABZR87_RS00265 0.43 -3.3 53,279 - ABZR87_RS00265 0.43 -0.5 53,279 - ABZR87_RS00265 0.43 -0.7 53,279 - ABZR87_RS00265 0.43 -0.7 53,366 - ABZR87_RS00265 0.48 -2.1 53,395 + ABZR87_RS00265 0.49 +2.2 53,396 - ABZR87_RS00265 0.49 -0.1
Or see this region's nucleotide sequence