Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3126

Experiment: 2 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntguaA and DvMF_3126 are separated by 248 nucleotidesDvMF_3126 and DvMF_3127 are separated by 360 nucleotidesDvMF_3127 and DvMF_3128 overlap by 11 nucleotides DvMF_3125: guaA - GMP synthase (RefSeq), at 3,944,298 to 3,945,845 guaA DvMF_3126: DvMF_3126 - inosine-5'-monophosphate dehydrogenase (RefSeq), at 3,946,094 to 3,947,554 _3126 DvMF_3127: DvMF_3127 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,947,915 to 3,948,535 _3127 DvMF_3128: DvMF_3128 - hypothetical protein (RefSeq), at 3,948,525 to 3,948,665 _3128 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -1 0 1at 3945.944 kb on + strandat 3947.774 kb on + strandat 3947.784 kb on + strandat 3947.922 kb on + strandat 3948.021 kb on + strand, within DvMF_3127at 3948.029 kb on - strand, within DvMF_3127at 3948.029 kb on - strand, within DvMF_3127at 3948.132 kb on - strand, within DvMF_3127at 3948.280 kb on - strand, within DvMF_3127at 3948.285 kb on - strand, within DvMF_3127at 3948.350 kb on + strand, within DvMF_3127at 3948.377 kb on - strand, within DvMF_3127at 3948.428 kb on + strand, within DvMF_3127at 3948.460 kb on + strand, within DvMF_3127

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
remove
3,945,944 + -0.8
3,947,774 + -0.2
3,947,784 + -0.7
3,947,922 + -0.7
3,948,021 + DvMF_3127 0.17 +0.2
3,948,029 - DvMF_3127 0.18 +0.2
3,948,029 - DvMF_3127 0.18 -0.3
3,948,132 - DvMF_3127 0.35 -0.7
3,948,280 - DvMF_3127 0.59 +0.5
3,948,285 - DvMF_3127 0.60 +0.7
3,948,350 + DvMF_3127 0.70 +1.1
3,948,377 - DvMF_3127 0.74 +0.3
3,948,428 + DvMF_3127 0.83 -1.7
3,948,460 + DvMF_3127 0.88 -0.9

Or see this region's nucleotide sequence