Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3031

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3029 and DvMF_3030 are separated by 136 nucleotidesDvMF_3030 and DvMF_3031 are separated by 480 nucleotidesDvMF_3031 and DvMF_3032 are separated by 267 nucleotides DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548 _3029 DvMF_3030: DvMF_3030 - regulatory protein, FmdB family (RefSeq), at 3,824,685 to 3,824,996 _3030 DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064 _3031 DvMF_3032: DvMF_3032 - dienelactone hydrolase (RefSeq), at 3,826,332 to 3,827,222 _3032 Position (kb) 3825 3826 3827Strain fitness (log2 ratio) -2 -1 0 1 2at 3825.038 kb on + strandat 3825.038 kb on + strandat 3825.046 kb on - strandat 3825.138 kb on - strandat 3825.268 kb on + strandat 3825.470 kb on - strandat 3825.473 kb on + strandat 3825.632 kb on - strand, within DvMF_3031at 3825.673 kb on + strand, within DvMF_3031at 3825.716 kb on + strand, within DvMF_3031at 3825.761 kb on - strand, within DvMF_3031at 3825.763 kb on + strand, within DvMF_3031at 3825.878 kb on + strand, within DvMF_3031at 3825.886 kb on - strand, within DvMF_3031at 3826.018 kb on - strandat 3826.059 kb on + strandat 3826.486 kb on - strand, within DvMF_3032at 3826.696 kb on - strand, within DvMF_3032at 3826.767 kb on - strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.982 kb on - strand, within DvMF_3032

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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3,825,038 + -0.2
3,825,038 + -0.7
3,825,046 - -0.7
3,825,138 - -0.2
3,825,268 + -0.1
3,825,470 - -0.6
3,825,473 + +0.2
3,825,632 - DvMF_3031 0.26 -1.9
3,825,673 + DvMF_3031 0.33 +0.1
3,825,716 + DvMF_3031 0.41 +0.3
3,825,761 - DvMF_3031 0.48 -0.5
3,825,763 + DvMF_3031 0.49 -0.0
3,825,878 + DvMF_3031 0.68 -0.0
3,825,886 - DvMF_3031 0.70 +1.1
3,826,018 - +0.0
3,826,059 + -0.6
3,826,486 - DvMF_3032 0.17 -1.0
3,826,696 - DvMF_3032 0.41 -0.2
3,826,767 - DvMF_3032 0.49 -0.6
3,826,969 + DvMF_3032 0.71 -0.8
3,826,969 + DvMF_3032 0.71 +1.9
3,826,982 - DvMF_3032 0.73 +0.4

Or see this region's nucleotide sequence