Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3020

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3019 and DvMF_3020 are separated by 398 nucleotidesDvMF_3020 and DvMF_3021 are separated by 378 nucleotides DvMF_3019: DvMF_3019 - glycosyl transferase group 1 (RefSeq), at 3,809,053 to 3,810,165 _3019 DvMF_3020: DvMF_3020 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,810,564 to 3,812,063 _3020 DvMF_3021: DvMF_3021 - aconitate hydratase (RefSeq), at 3,812,442 to 3,814,367 _3021 Position (kb) 3810 3811 3812 3813Strain fitness (log2 ratio) -2 -1 0 1at 3809.701 kb on - strand, within DvMF_3019at 3809.729 kb on + strand, within DvMF_3019at 3809.847 kb on + strand, within DvMF_3019at 3809.847 kb on + strand, within DvMF_3019at 3810.000 kb on + strand, within DvMF_3019at 3810.051 kb on + strand, within DvMF_3019at 3810.263 kb on + strandat 3810.268 kb on + strandat 3810.293 kb on - strandat 3810.537 kb on + strandat 3810.544 kb on - strandat 3810.566 kb on - strandat 3810.566 kb on - strandat 3810.673 kb on - strandat 3810.673 kb on - strandat 3810.825 kb on - strand, within DvMF_3020at 3810.827 kb on - strand, within DvMF_3020at 3810.860 kb on + strand, within DvMF_3020at 3810.964 kb on + strand, within DvMF_3020at 3811.163 kb on - strand, within DvMF_3020at 3811.258 kb on - strand, within DvMF_3020at 3811.461 kb on + strand, within DvMF_3020at 3811.493 kb on + strand, within DvMF_3020at 3811.501 kb on - strand, within DvMF_3020at 3811.705 kb on + strand, within DvMF_3020at 3811.981 kb on + strandat 3812.092 kb on - strandat 3812.097 kb on - strandat 3812.189 kb on + strandat 3812.285 kb on + strandat 3812.641 kb on - strand, within DvMF_3021at 3813.037 kb on + strand, within DvMF_3021

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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3,809,701 - DvMF_3019 0.58 -1.4
3,809,729 + DvMF_3019 0.61 -2.4
3,809,847 + DvMF_3019 0.71 -1.8
3,809,847 + DvMF_3019 0.71 -0.7
3,810,000 + DvMF_3019 0.85 -0.9
3,810,051 + DvMF_3019 0.90 -2.3
3,810,263 + -0.9
3,810,268 + -0.8
3,810,293 - +0.3
3,810,537 + +1.3
3,810,544 - +1.2
3,810,566 - +0.0
3,810,566 - -0.3
3,810,673 - +1.2
3,810,673 - +1.1
3,810,825 - DvMF_3020 0.17 +1.4
3,810,827 - DvMF_3020 0.18 +1.3
3,810,860 + DvMF_3020 0.20 +1.3
3,810,964 + DvMF_3020 0.27 +1.2
3,811,163 - DvMF_3020 0.40 +0.8
3,811,258 - DvMF_3020 0.46 +1.0
3,811,461 + DvMF_3020 0.60 +1.4
3,811,493 + DvMF_3020 0.62 +1.2
3,811,501 - DvMF_3020 0.62 +1.3
3,811,705 + DvMF_3020 0.76 +1.2
3,811,981 + +1.3
3,812,092 - -0.7
3,812,097 - -0.2
3,812,189 + -0.3
3,812,285 + +0.4
3,812,641 - DvMF_3021 0.10 +0.4
3,813,037 + DvMF_3021 0.31 +0.4

Or see this region's nucleotide sequence