Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2961

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2961 and DvMF_2962 are separated by 99 nucleotidesDvMF_2962 and DvMF_2963 are separated by 85 nucleotides DvMF_2961: DvMF_2961 - hypothetical protein (RefSeq), at 3,734,657 to 3,735,172 _2961 DvMF_2962: DvMF_2962 - stationary-phase survival protein SurE (RefSeq), at 3,735,272 to 3,736,075 _2962 DvMF_2963: DvMF_2963 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,736,161 to 3,739,916 _2963 Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -1 0 1at 3733.748 kb on - strandat 3733.781 kb on - strandat 3733.781 kb on - strandat 3733.791 kb on - strandat 3733.965 kb on + strandat 3733.965 kb on + strandat 3734.084 kb on + strandat 3734.258 kb on - strandat 3734.387 kb on + strandat 3734.395 kb on - strandat 3734.395 kb on - strandat 3734.467 kb on - strandat 3734.484 kb on + strandat 3734.500 kb on - strandat 3734.628 kb on - strandat 3734.664 kb on + strandat 3734.664 kb on + strandat 3734.664 kb on + strandat 3734.672 kb on - strandat 3734.672 kb on - strandat 3734.832 kb on + strand, within DvMF_2961at 3734.875 kb on + strand, within DvMF_2961at 3735.045 kb on + strand, within DvMF_2961at 3735.152 kb on + strandat 3735.627 kb on + strand, within DvMF_2962at 3735.723 kb on + strand, within DvMF_2962at 3735.788 kb on - strand, within DvMF_2962at 3735.949 kb on - strand, within DvMF_2962at 3736.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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3,733,748 - -0.4
3,733,781 - -0.7
3,733,781 - -0.6
3,733,791 - -0.2
3,733,965 + -0.6
3,733,965 + -0.7
3,734,084 + +0.5
3,734,258 - -0.7
3,734,387 + -0.4
3,734,395 - -0.5
3,734,395 - -0.4
3,734,467 - -1.0
3,734,484 + -0.9
3,734,500 - -0.2
3,734,628 - +1.4
3,734,664 + -0.7
3,734,664 + -0.4
3,734,664 + -0.6
3,734,672 - -1.1
3,734,672 - -1.3
3,734,832 + DvMF_2961 0.34 -0.5
3,734,875 + DvMF_2961 0.42 +0.0
3,735,045 + DvMF_2961 0.75 -0.9
3,735,152 + +0.0
3,735,627 + DvMF_2962 0.44 -0.4
3,735,723 + DvMF_2962 0.56 +0.3
3,735,788 - DvMF_2962 0.64 -0.2
3,735,949 - DvMF_2962 0.84 -0.3
3,736,121 + -1.0

Or see this region's nucleotide sequence