Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2886

Experiment: 2 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2884 and DvMF_2885 are separated by 16 nucleotidesDvMF_2885 and DvMF_2886 are separated by 196 nucleotidesDvMF_2886 and rpsP are separated by 83 nucleotidesrpsP and DvMF_2888 are separated by 88 nucleotides DvMF_2884: DvMF_2884 - tRNA (guanine-N1)-methyltransferase (RefSeq), at 3,640,671 to 3,641,966 _2884 DvMF_2885: DvMF_2885 - 16S rRNA processing protein RimM (RefSeq), at 3,641,983 to 3,642,615 _2885 DvMF_2886: DvMF_2886 - hypothetical protein (RefSeq), at 3,642,812 to 3,643,045 _2886 DvMF_2887: rpsP - 30S ribosomal protein S16 (RefSeq), at 3,643,129 to 3,643,368 rpsP DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013 _2888 Position (kb) 3642 3643 3644Strain fitness (log2 ratio) -1 0 1at 3642.032 kb on + strandat 3642.057 kb on + strand, within DvMF_2885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
remove
3,642,032 + -1.4
3,642,057 + DvMF_2885 0.12 -0.2

Or see this region's nucleotide sequence