Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2754

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2753 and DvMF_2754 are separated by 276 nucleotidesDvMF_2754 and DvMF_2755 are separated by 347 nucleotides DvMF_2753: DvMF_2753 - ABC transporter related (RefSeq), at 3,478,496 to 3,479,263 _2753 DvMF_2754: DvMF_2754 - ABC transporter related (RefSeq), at 3,479,540 to 3,480,256 _2754 DvMF_2755: DvMF_2755 - response regulator receiver protein (RefSeq), at 3,480,604 to 3,481,008 _2755 Position (kb) 3479 3480 3481Strain fitness (log2 ratio) -1 0 1at 3478.856 kb on - strand, within DvMF_2753at 3478.921 kb on - strand, within DvMF_2753at 3479.065 kb on + strand, within DvMF_2753at 3479.227 kb on + strandat 3479.313 kb on - strandat 3479.570 kb on + strandat 3479.578 kb on - strandat 3479.588 kb on + strandat 3479.596 kb on - strandat 3479.657 kb on + strand, within DvMF_2754at 3479.696 kb on - strand, within DvMF_2754at 3479.719 kb on + strand, within DvMF_2754at 3480.006 kb on - strand, within DvMF_2754at 3480.413 kb on + strandat 3480.697 kb on + strand, within DvMF_2755at 3481.046 kb on + strandat 3481.054 kb on - strandat 3481.121 kb on + strandat 3481.121 kb on + strandat 3481.164 kb on + strandat 3481.172 kb on - strandat 3481.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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3,478,856 - DvMF_2753 0.47 -0.9
3,478,921 - DvMF_2753 0.55 +1.1
3,479,065 + DvMF_2753 0.74 +0.2
3,479,227 + -0.8
3,479,313 - -0.5
3,479,570 + -0.4
3,479,578 - -0.6
3,479,588 + -0.4
3,479,596 - -1.4
3,479,657 + DvMF_2754 0.16 -1.1
3,479,696 - DvMF_2754 0.22 -1.2
3,479,719 + DvMF_2754 0.25 -0.9
3,480,006 - DvMF_2754 0.65 -0.8
3,480,413 + -0.3
3,480,697 + DvMF_2755 0.23 -0.2
3,481,046 + -0.7
3,481,054 - -0.5
3,481,121 + -0.8
3,481,121 + -0.1
3,481,164 + +0.2
3,481,172 - -0.2
3,481,172 - +1.4

Or see this region's nucleotide sequence