Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2553

Experiment: 2 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2552 and DvMF_2553 are separated by 5 nucleotidesDvMF_2553 and DvMF_2554 are separated by 85 nucleotidesDvMF_2554 and DvMF_2555 are separated by 20 nucleotides DvMF_2552: DvMF_2552 - UspA domain protein (RefSeq), at 3,226,974 to 3,227,891 _2552 DvMF_2553: DvMF_2553 - hypothetical protein (RefSeq), at 3,227,897 to 3,228,463 _2553 DvMF_2554: DvMF_2554 - acidic cytochrome c3 (RefSeq), at 3,228,549 to 3,229,013 _2554 DvMF_2555: DvMF_2555 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,229,034 to 3,230,371 _2555 Position (kb) 3227 3228 3229Strain fitness (log2 ratio) -1 0 1at 3226.926 kb on + strandat 3227.273 kb on + strand, within DvMF_2552at 3227.288 kb on + strand, within DvMF_2552at 3227.310 kb on - strand, within DvMF_2552at 3227.463 kb on + strand, within DvMF_2552at 3227.471 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.603 kb on - strand, within DvMF_2552at 3227.788 kb on + strand, within DvMF_2552at 3228.056 kb on + strand, within DvMF_2553at 3228.064 kb on - strand, within DvMF_2553at 3228.099 kb on + strand, within DvMF_2553at 3228.214 kb on + strand, within DvMF_2553at 3228.222 kb on - strand, within DvMF_2553at 3228.285 kb on + strand, within DvMF_2553at 3228.295 kb on + strand, within DvMF_2553at 3228.295 kb on + strand, within DvMF_2553at 3228.351 kb on + strand, within DvMF_2553at 3228.702 kb on - strand, within DvMF_2554at 3228.801 kb on - strand, within DvMF_2554at 3229.232 kb on - strand, within DvMF_2555at 3229.319 kb on - strand, within DvMF_2555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
remove
3,226,926 + -0.7
3,227,273 + DvMF_2552 0.33 -1.2
3,227,288 + DvMF_2552 0.34 -0.2
3,227,310 - DvMF_2552 0.37 -1.0
3,227,463 + DvMF_2552 0.53 -0.4
3,227,471 - DvMF_2552 0.54 -1.0
3,227,603 - DvMF_2552 0.69 -0.7
3,227,603 - DvMF_2552 0.69 -1.4
3,227,788 + DvMF_2552 0.89 -1.4
3,228,056 + DvMF_2553 0.28 -0.4
3,228,064 - DvMF_2553 0.29 +1.1
3,228,099 + DvMF_2553 0.36 -0.9
3,228,214 + DvMF_2553 0.56 -0.7
3,228,222 - DvMF_2553 0.57 -1.3
3,228,285 + DvMF_2553 0.68 -0.9
3,228,295 + DvMF_2553 0.70 -0.5
3,228,295 + DvMF_2553 0.70 -0.4
3,228,351 + DvMF_2553 0.80 -0.6
3,228,702 - DvMF_2554 0.33 +1.0
3,228,801 - DvMF_2554 0.54 +1.1
3,229,232 - DvMF_2555 0.15 +1.1
3,229,319 - DvMF_2555 0.21 +0.8

Or see this region's nucleotide sequence