Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2431 and DvMF_2432 are separated by 19 nucleotides DvMF_2432 and DvMF_2433 are separated by 9 nucleotides DvMF_2433 and DvMF_2434 overlap by 22 nucleotides DvMF_2434 and DvMF_2435 are separated by 47 nucleotides
DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970
_2431
DvMF_2432: DvMF_2432 - type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq), at 3,067,990 to 3,068,823
_2432
DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570
_2433
DvMF_2434: DvMF_2434 - type III secretion system protein (RefSeq), at 3,069,549 to 3,070,166
_2434
DvMF_2435: DvMF_2435 - type III secretion system ATPase (RefSeq), at 3,070,214 to 3,071,530
_2435
Position (kb)
3068
3069
3070 Strain fitness (log2 ratio)
-2
-1
0
1 at 3067.862 kb on - strand, within DvMF_2431 at 3067.952 kb on + strand at 3068.118 kb on + strand, within DvMF_2432 at 3068.118 kb on + strand, within DvMF_2432 at 3068.126 kb on - strand, within DvMF_2432 at 3068.825 kb on - strand at 3068.825 kb on - strand at 3068.943 kb on - strand, within DvMF_2433 at 3069.371 kb on + strand, within DvMF_2433 at 3069.627 kb on + strand, within DvMF_2434 at 3069.633 kb on - strand, within DvMF_2434 at 3069.704 kb on + strand, within DvMF_2434 at 3070.269 kb on + strand at 3070.292 kb on + strand at 3070.332 kb on + strand at 3070.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 3,067,862 - DvMF_2431 0.86 -0.4 3,067,952 + +0.0 3,068,118 + DvMF_2432 0.15 -0.8 3,068,118 + DvMF_2432 0.15 +0.2 3,068,126 - DvMF_2432 0.16 -1.3 3,068,825 - -0.2 3,068,825 - -0.5 3,068,943 - DvMF_2433 0.15 -1.7 3,069,371 + DvMF_2433 0.73 -1.9 3,069,627 + DvMF_2434 0.13 -1.3 3,069,633 - DvMF_2434 0.14 -1.5 3,069,704 + DvMF_2434 0.25 -1.1 3,070,269 + -1.0 3,070,292 + -0.4 3,070,332 + -1.0 3,070,340 - -0.9
Or see this region's nucleotide sequence