Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2185

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2184 and DvMF_2185 are separated by 296 nucleotidesDvMF_2185 and DvMF_2186 are separated by 245 nucleotides DvMF_2184: DvMF_2184 - hypothetical protein (RefSeq), at 2,726,347 to 2,727,660 _2184 DvMF_2185: DvMF_2185 - ThiJ/PfpI domain protein (RefSeq), at 2,727,957 to 2,728,697 _2185 DvMF_2186: DvMF_2186 - dual specificity protein phosphatase (RefSeq), at 2,728,943 to 2,730,445 _2186 Position (kb) 2727 2728 2729Strain fitness (log2 ratio) -3 -2 -1 0 1at 2727.031 kb on - strand, within DvMF_2184at 2727.120 kb on - strand, within DvMF_2184at 2727.235 kb on + strand, within DvMF_2184at 2727.243 kb on - strand, within DvMF_2184at 2727.287 kb on + strand, within DvMF_2184at 2727.351 kb on + strand, within DvMF_2184at 2727.351 kb on + strand, within DvMF_2184at 2727.655 kb on + strandat 2727.679 kb on + strandat 2727.737 kb on - strandat 2728.013 kb on - strandat 2728.118 kb on + strand, within DvMF_2185at 2728.148 kb on - strand, within DvMF_2185at 2728.153 kb on - strand, within DvMF_2185at 2728.705 kb on - strandat 2728.876 kb on + strandat 2728.889 kb on + strandat 2728.920 kb on - strandat 2729.109 kb on - strand, within DvMF_2186at 2729.163 kb on - strand, within DvMF_2186at 2729.169 kb on + strand, within DvMF_2186at 2729.266 kb on - strand, within DvMF_2186at 2729.350 kb on + strand, within DvMF_2186at 2729.570 kb on - strand, within DvMF_2186at 2729.606 kb on - strand, within DvMF_2186

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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2,727,031 - DvMF_2184 0.52 +0.4
2,727,120 - DvMF_2184 0.59 -0.6
2,727,235 + DvMF_2184 0.68 +0.0
2,727,243 - DvMF_2184 0.68 +0.1
2,727,287 + DvMF_2184 0.72 -0.4
2,727,351 + DvMF_2184 0.76 -1.0
2,727,351 + DvMF_2184 0.76 -0.8
2,727,655 + +0.7
2,727,679 + -2.4
2,727,737 - -1.3
2,728,013 - +0.2
2,728,118 + DvMF_2185 0.22 +1.0
2,728,148 - DvMF_2185 0.26 -2.9
2,728,153 - DvMF_2185 0.26 +0.1
2,728,705 - -0.7
2,728,876 + +0.0
2,728,889 + -0.6
2,728,920 - +0.8
2,729,109 - DvMF_2186 0.11 -0.1
2,729,163 - DvMF_2186 0.15 -2.0
2,729,169 + DvMF_2186 0.15 -1.7
2,729,266 - DvMF_2186 0.21 -2.3
2,729,350 + DvMF_2186 0.27 -1.7
2,729,570 - DvMF_2186 0.42 -1.9
2,729,606 - DvMF_2186 0.44 -1.9

Or see this region's nucleotide sequence