Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2183 and DvMF_2184 are separated by 228 nucleotides DvMF_2184 and DvMF_2185 are separated by 296 nucleotides
DvMF_2183: DvMF_2183 - malate synthase G (RefSeq), at 2,723,923 to 2,726,118
_2183
DvMF_2184: DvMF_2184 - hypothetical protein (RefSeq), at 2,726,347 to 2,727,660
_2184
DvMF_2185: DvMF_2185 - ThiJ/PfpI domain protein (RefSeq), at 2,727,957 to 2,728,697
_2185
Position (kb)
2726
2727
2728 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2725.598 kb on - strand, within DvMF_2183 at 2725.615 kb on + strand, within DvMF_2183 at 2725.648 kb on + strand, within DvMF_2183 at 2725.756 kb on + strand, within DvMF_2183 at 2725.757 kb on - strand, within DvMF_2183 at 2725.766 kb on + strand, within DvMF_2183 at 2725.774 kb on - strand, within DvMF_2183 at 2725.795 kb on - strand, within DvMF_2183 at 2725.803 kb on - strand, within DvMF_2183 at 2725.811 kb on + strand, within DvMF_2183 at 2726.004 kb on + strand at 2726.057 kb on + strand at 2726.078 kb on + strand at 2726.084 kb on + strand at 2726.112 kb on + strand at 2726.263 kb on + strand at 2726.289 kb on + strand at 2726.408 kb on + strand at 2726.410 kb on - strand at 2726.450 kb on - strand at 2726.519 kb on + strand, within DvMF_2184 at 2726.539 kb on - strand, within DvMF_2184 at 2726.573 kb on - strand, within DvMF_2184 at 2726.846 kb on - strand, within DvMF_2184 at 2727.031 kb on - strand, within DvMF_2184 at 2727.120 kb on - strand, within DvMF_2184 at 2727.235 kb on + strand, within DvMF_2184 at 2727.243 kb on - strand, within DvMF_2184 at 2727.287 kb on + strand, within DvMF_2184 at 2727.351 kb on + strand, within DvMF_2184 at 2727.351 kb on + strand, within DvMF_2184 at 2727.655 kb on + strand at 2727.679 kb on + strand at 2727.737 kb on - strand at 2728.013 kb on - strand at 2728.118 kb on + strand, within DvMF_2185 at 2728.148 kb on - strand, within DvMF_2185 at 2728.153 kb on - strand, within DvMF_2185
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 2,725,598 - DvMF_2183 0.76 -1.1 2,725,615 + DvMF_2183 0.77 -0.5 2,725,648 + DvMF_2183 0.79 -0.9 2,725,756 + DvMF_2183 0.83 +0.7 2,725,757 - DvMF_2183 0.84 +0.4 2,725,766 + DvMF_2183 0.84 -1.1 2,725,774 - DvMF_2183 0.84 -0.9 2,725,795 - DvMF_2183 0.85 -0.4 2,725,803 - DvMF_2183 0.86 -0.9 2,725,811 + DvMF_2183 0.86 -0.9 2,726,004 + -1.0 2,726,057 + -0.9 2,726,078 + -1.2 2,726,084 + -0.1 2,726,112 + -2.0 2,726,263 + -0.5 2,726,289 + -0.1 2,726,408 + -0.5 2,726,410 - -1.4 2,726,450 - -1.2 2,726,519 + DvMF_2184 0.13 -0.5 2,726,539 - DvMF_2184 0.15 -0.6 2,726,573 - DvMF_2184 0.17 -1.0 2,726,846 - DvMF_2184 0.38 -0.4 2,727,031 - DvMF_2184 0.52 +0.4 2,727,120 - DvMF_2184 0.59 -0.6 2,727,235 + DvMF_2184 0.68 +0.0 2,727,243 - DvMF_2184 0.68 +0.1 2,727,287 + DvMF_2184 0.72 -0.4 2,727,351 + DvMF_2184 0.76 -1.0 2,727,351 + DvMF_2184 0.76 -0.8 2,727,655 + +0.7 2,727,679 + -2.4 2,727,737 - -1.3 2,728,013 - +0.2 2,728,118 + DvMF_2185 0.22 +1.0 2,728,148 - DvMF_2185 0.26 -2.9 2,728,153 - DvMF_2185 0.26 +0.1
Or see this region's nucleotide sequence