Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1876

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1875 and DvMF_1876 are separated by 704 nucleotidesDvMF_1876 and DvMF_1877 are separated by 574 nucleotides DvMF_1875: DvMF_1875 - multi-sensor hybrid histidine kinase (RefSeq), at 2,304,675 to 2,306,792 _1875 DvMF_1876: DvMF_1876 - no description, at 2,307,497 to 2,307,796 _1876 DvMF_1877: DvMF_1877 - hypothetical protein (RefSeq), at 2,308,371 to 2,308,775 _1877 Position (kb) 2307 2308Strain fitness (log2 ratio) -1 0 1at 2306.600 kb on + strandat 2306.805 kb on - strandat 2307.043 kb on + strandat 2307.245 kb on - strandat 2307.250 kb on - strandat 2307.257 kb on + strandat 2307.260 kb on - strandat 2307.262 kb on + strandat 2307.262 kb on + strandat 2307.262 kb on + strandat 2307.265 kb on - strandat 2307.267 kb on + strandat 2307.536 kb on - strand, within DvMF_1876at 2308.395 kb on + strandat 2308.500 kb on + strand, within DvMF_1877at 2308.549 kb on + strand, within DvMF_1877at 2308.595 kb on + strand, within DvMF_1877at 2308.595 kb on + strand, within DvMF_1877at 2308.603 kb on - strand, within DvMF_1877at 2308.603 kb on - strand, within DvMF_1877at 2308.753 kb on - strandat 2308.778 kb on - strandat 2308.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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2,306,600 + -0.7
2,306,805 - -0.3
2,307,043 + -0.2
2,307,245 - +0.3
2,307,250 - -0.6
2,307,257 + -1.4
2,307,260 - -0.8
2,307,262 + -0.7
2,307,262 + +0.5
2,307,262 + -1.5
2,307,265 - -0.6
2,307,267 + -0.4
2,307,536 - DvMF_1876 0.13 -1.6
2,308,395 + +0.2
2,308,500 + DvMF_1877 0.32 -0.5
2,308,549 + DvMF_1877 0.44 -0.9
2,308,595 + DvMF_1877 0.55 -0.2
2,308,595 + DvMF_1877 0.55 -0.3
2,308,603 - DvMF_1877 0.57 -1.0
2,308,603 - DvMF_1877 0.57 -0.7
2,308,753 - -0.1
2,308,778 - -1.4
2,308,778 - -1.1

Or see this region's nucleotide sequence