Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1808

Experiment: 2 days starvation 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1807 and DvMF_1808 are separated by 93 nucleotidesDvMF_1808 and DvMF_1809 are separated by 307 nucleotides DvMF_1807: DvMF_1807 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,207,775 to 2,208,737 _1807 DvMF_1808: DvMF_1808 - protein of unknown function DUF1078 domain protein (RefSeq), at 2,208,831 to 2,210,336 _1808 DvMF_1809: DvMF_1809 - Methenyltetrahydrofolate cyclohydrolase (RefSeq), at 2,210,644 to 2,211,510 _1809 Position (kb) 2208 2209 2210 2211Strain fitness (log2 ratio) -1 0 1at 2208.042 kb on + strand, within DvMF_1807at 2208.049 kb on - strand, within DvMF_1807at 2208.087 kb on - strand, within DvMF_1807at 2208.435 kb on - strand, within DvMF_1807at 2208.944 kb on - strandat 2208.962 kb on + strandat 2209.095 kb on + strand, within DvMF_1808at 2209.203 kb on + strand, within DvMF_1808at 2209.290 kb on - strand, within DvMF_1808at 2209.344 kb on - strand, within DvMF_1808at 2209.546 kb on + strand, within DvMF_1808at 2209.694 kb on - strand, within DvMF_1808at 2209.723 kb on + strand, within DvMF_1808at 2209.820 kb on + strand, within DvMF_1808at 2209.976 kb on - strand, within DvMF_1808at 2210.021 kb on - strand, within DvMF_1808at 2210.119 kb on + strand, within DvMF_1808at 2210.253 kb on - strandat 2210.256 kb on + strandat 2210.350 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
remove
2,208,042 + DvMF_1807 0.28 -0.5
2,208,049 - DvMF_1807 0.28 -1.0
2,208,087 - DvMF_1807 0.32 -0.5
2,208,435 - DvMF_1807 0.69 +0.9
2,208,944 - +1.1
2,208,962 + +0.8
2,209,095 + DvMF_1808 0.18 +0.7
2,209,203 + DvMF_1808 0.25 +1.0
2,209,290 - DvMF_1808 0.30 +0.7
2,209,344 - DvMF_1808 0.34 +0.8
2,209,546 + DvMF_1808 0.47 +0.9
2,209,694 - DvMF_1808 0.57 +1.0
2,209,723 + DvMF_1808 0.59 +1.6
2,209,820 + DvMF_1808 0.66 +0.6
2,209,976 - DvMF_1808 0.76 +1.2
2,210,021 - DvMF_1808 0.79 +1.3
2,210,119 + DvMF_1808 0.86 +0.9
2,210,253 - +0.9
2,210,256 + +1.4
2,210,350 + +0.4

Or see this region's nucleotide sequence