Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1705

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1704 and DvMF_1705 are separated by 352 nucleotidesDvMF_1705 and DvMF_1706 are separated by 373 nucleotides DvMF_1704: DvMF_1704 - GCN5-related N-acetyltransferase (RefSeq), at 2,079,760 to 2,080,707 _1704 DvMF_1705: DvMF_1705 - 4-alpha-glucanotransferase (RefSeq), at 2,081,060 to 2,082,598 _1705 DvMF_1706: DvMF_1706 - glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 2,082,972 to 2,084,795 _1706 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -3 -2 -1 0 1at 2080.070 kb on + strand, within DvMF_1704at 2080.156 kb on - strand, within DvMF_1704at 2080.166 kb on - strand, within DvMF_1704at 2080.229 kb on - strand, within DvMF_1704at 2080.229 kb on - strand, within DvMF_1704at 2080.267 kb on + strand, within DvMF_1704at 2080.287 kb on + strand, within DvMF_1704at 2080.472 kb on + strand, within DvMF_1704at 2080.550 kb on + strand, within DvMF_1704at 2080.551 kb on - strand, within DvMF_1704at 2080.551 kb on - strand, within DvMF_1704at 2080.568 kb on - strand, within DvMF_1704at 2080.634 kb on - strandat 2080.650 kb on + strandat 2080.656 kb on - strandat 2080.766 kb on - strandat 2080.849 kb on - strandat 2080.856 kb on + strandat 2080.889 kb on - strandat 2081.062 kb on + strandat 2081.090 kb on + strandat 2081.162 kb on - strandat 2081.396 kb on - strand, within DvMF_1705at 2081.448 kb on - strand, within DvMF_1705at 2081.575 kb on + strand, within DvMF_1705at 2081.629 kb on - strand, within DvMF_1705at 2081.876 kb on + strand, within DvMF_1705at 2081.995 kb on + strand, within DvMF_1705at 2082.003 kb on - strand, within DvMF_1705at 2082.083 kb on - strand, within DvMF_1705at 2082.324 kb on - strand, within DvMF_1705at 2082.372 kb on + strand, within DvMF_1705at 2082.421 kb on - strand, within DvMF_1705at 2082.448 kb on + strandat 2082.539 kb on - strandat 2082.647 kb on + strandat 2082.662 kb on + strandat 2082.776 kb on + strandat 2082.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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2,080,070 + DvMF_1704 0.33 -0.6
2,080,156 - DvMF_1704 0.42 -0.7
2,080,166 - DvMF_1704 0.43 +0.2
2,080,229 - DvMF_1704 0.49 -0.7
2,080,229 - DvMF_1704 0.49 +0.5
2,080,267 + DvMF_1704 0.53 +0.5
2,080,287 + DvMF_1704 0.56 -0.0
2,080,472 + DvMF_1704 0.75 -0.3
2,080,550 + DvMF_1704 0.83 -0.4
2,080,551 - DvMF_1704 0.83 -0.4
2,080,551 - DvMF_1704 0.83 -0.5
2,080,568 - DvMF_1704 0.85 -1.3
2,080,634 - -0.6
2,080,650 + +0.6
2,080,656 - -0.9
2,080,766 - +0.2
2,080,849 - -1.0
2,080,856 + +0.3
2,080,889 - +1.4
2,081,062 + +0.1
2,081,090 + -0.6
2,081,162 - +0.2
2,081,396 - DvMF_1705 0.22 -0.5
2,081,448 - DvMF_1705 0.25 +0.2
2,081,575 + DvMF_1705 0.33 -0.4
2,081,629 - DvMF_1705 0.37 +0.1
2,081,876 + DvMF_1705 0.53 +0.0
2,081,995 + DvMF_1705 0.61 -2.3
2,082,003 - DvMF_1705 0.61 -0.5
2,082,083 - DvMF_1705 0.66 -2.9
2,082,324 - DvMF_1705 0.82 +0.0
2,082,372 + DvMF_1705 0.85 -0.4
2,082,421 - DvMF_1705 0.88 -0.6
2,082,448 + -0.6
2,082,539 - +0.8
2,082,647 + -0.2
2,082,662 + +1.0
2,082,776 + -0.7
2,082,827 - -1.5

Or see this region's nucleotide sequence