Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1581 and DvMF_1582 overlap by 4 nucleotides DvMF_1582 and DvMF_1583 overlap by 4 nucleotides DvMF_1583 and DvMF_1584 overlap by 8 nucleotides
DvMF_1581: DvMF_1581 - inner-membrane translocator (RefSeq), at 1,950,400 to 1,951,326
_1581
DvMF_1582: DvMF_1582 - inner-membrane translocator (RefSeq), at 1,951,323 to 1,952,264
_1582
DvMF_1583: DvMF_1583 - ABC transporter related (RefSeq), at 1,952,261 to 1,952,983
_1583
DvMF_1584: DvMF_1584 - ABC transporter related (RefSeq), at 1,952,976 to 1,953,680
_1584
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-1
0
1
2 at 1950.352 kb on + strand at 1950.352 kb on + strand at 1950.365 kb on + strand at 1950.393 kb on - strand at 1950.727 kb on + strand, within DvMF_1581 at 1950.890 kb on - strand, within DvMF_1581 at 1950.909 kb on - strand, within DvMF_1581 at 1950.921 kb on + strand, within DvMF_1581 at 1950.963 kb on + strand, within DvMF_1581 at 1950.963 kb on + strand, within DvMF_1581 at 1950.976 kb on + strand, within DvMF_1581 at 1950.981 kb on + strand, within DvMF_1581 at 1951.011 kb on + strand, within DvMF_1581 at 1951.049 kb on - strand, within DvMF_1581 at 1951.168 kb on - strand, within DvMF_1581 at 1951.175 kb on + strand, within DvMF_1581 at 1951.179 kb on + strand, within DvMF_1581 at 1951.227 kb on - strand, within DvMF_1581 at 1951.227 kb on - strand, within DvMF_1581 at 1951.346 kb on + strand at 1951.527 kb on + strand, within DvMF_1582 at 1951.618 kb on + strand, within DvMF_1582 at 1951.654 kb on + strand, within DvMF_1582 at 1951.819 kb on - strand, within DvMF_1582 at 1951.847 kb on - strand, within DvMF_1582 at 1951.941 kb on - strand, within DvMF_1582 at 1951.969 kb on - strand, within DvMF_1582 at 1952.352 kb on - strand, within DvMF_1583 at 1952.393 kb on - strand, within DvMF_1583 at 1952.393 kb on - strand, within DvMF_1583 at 1952.398 kb on - strand, within DvMF_1583 at 1952.403 kb on - strand, within DvMF_1583 at 1952.443 kb on + strand, within DvMF_1583 at 1952.443 kb on + strand, within DvMF_1583 at 1952.516 kb on - strand, within DvMF_1583 at 1952.516 kb on - strand, within DvMF_1583 at 1952.610 kb on - strand, within DvMF_1583 at 1952.618 kb on + strand, within DvMF_1583 at 1952.803 kb on - strand, within DvMF_1583 at 1952.919 kb on - strand at 1952.952 kb on + strand at 1953.141 kb on + strand, within DvMF_1584 at 1953.150 kb on - strand, within DvMF_1584 at 1953.190 kb on + strand, within DvMF_1584 at 1953.263 kb on - strand, within DvMF_1584
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 1,950,352 + +0.6 1,950,352 + -0.0 1,950,365 + +0.1 1,950,393 - +2.4 1,950,727 + DvMF_1581 0.35 -0.3 1,950,890 - DvMF_1581 0.53 -0.6 1,950,909 - DvMF_1581 0.55 -0.7 1,950,921 + DvMF_1581 0.56 -0.7 1,950,963 + DvMF_1581 0.61 -0.5 1,950,963 + DvMF_1581 0.61 -0.7 1,950,976 + DvMF_1581 0.62 -0.1 1,950,981 + DvMF_1581 0.63 -0.8 1,951,011 + DvMF_1581 0.66 -0.6 1,951,049 - DvMF_1581 0.70 -1.6 1,951,168 - DvMF_1581 0.83 -0.6 1,951,175 + DvMF_1581 0.84 -0.8 1,951,179 + DvMF_1581 0.84 -0.3 1,951,227 - DvMF_1581 0.89 -0.1 1,951,227 - DvMF_1581 0.89 +0.1 1,951,346 + +0.3 1,951,527 + DvMF_1582 0.22 -0.1 1,951,618 + DvMF_1582 0.31 -0.6 1,951,654 + DvMF_1582 0.35 -0.0 1,951,819 - DvMF_1582 0.53 -0.8 1,951,847 - DvMF_1582 0.56 -1.5 1,951,941 - DvMF_1582 0.66 +0.2 1,951,969 - DvMF_1582 0.69 +0.6 1,952,352 - DvMF_1583 0.13 -0.3 1,952,393 - DvMF_1583 0.18 -0.4 1,952,393 - DvMF_1583 0.18 -0.8 1,952,398 - DvMF_1583 0.19 -1.1 1,952,403 - DvMF_1583 0.20 -0.5 1,952,443 + DvMF_1583 0.25 -1.3 1,952,443 + DvMF_1583 0.25 -1.1 1,952,516 - DvMF_1583 0.35 +0.3 1,952,516 - DvMF_1583 0.35 -1.2 1,952,610 - DvMF_1583 0.48 -0.4 1,952,618 + DvMF_1583 0.49 -0.9 1,952,803 - DvMF_1583 0.75 +0.1 1,952,919 - -0.8 1,952,952 + -0.2 1,953,141 + DvMF_1584 0.23 -0.1 1,953,150 - DvMF_1584 0.25 -0.5 1,953,190 + DvMF_1584 0.30 -0.8 1,953,263 - DvMF_1584 0.41 -1.0
Or see this region's nucleotide sequence