Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1527

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1526 and DvMF_1527 are separated by 198 nucleotidesDvMF_1527 and DvMF_1528 are separated by 507 nucleotides DvMF_1526: DvMF_1526 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 1,880,415 to 1,881,662 _1526 DvMF_1527: DvMF_1527 - hypothetical protein (RefSeq), at 1,881,861 to 1,882,715 _1527 DvMF_1528: DvMF_1528 - phospholipase D/Transphosphatidylase (RefSeq), at 1,883,223 to 1,884,692 _1528 Position (kb) 1881 1882 1883Strain fitness (log2 ratio) -2 -1 0 1at 1880.909 kb on - strand, within DvMF_1526at 1881.126 kb on - strand, within DvMF_1526at 1881.172 kb on + strand, within DvMF_1526at 1881.179 kb on + strand, within DvMF_1526at 1881.378 kb on - strand, within DvMF_1526at 1881.392 kb on - strand, within DvMF_1526at 1881.402 kb on - strand, within DvMF_1526at 1881.949 kb on + strand, within DvMF_1527at 1882.070 kb on + strand, within DvMF_1527at 1882.234 kb on + strand, within DvMF_1527at 1882.403 kb on - strand, within DvMF_1527at 1882.462 kb on - strand, within DvMF_1527at 1883.307 kb on - strandat 1883.422 kb on - strand, within DvMF_1528at 1883.587 kb on - strand, within DvMF_1528at 1883.594 kb on + strand, within DvMF_1528at 1883.662 kb on + strand, within DvMF_1528at 1883.670 kb on - strand, within DvMF_1528

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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1,880,909 - DvMF_1526 0.40 -1.8
1,881,126 - DvMF_1526 0.57 -0.8
1,881,172 + DvMF_1526 0.61 -0.2
1,881,179 + DvMF_1526 0.61 -1.3
1,881,378 - DvMF_1526 0.77 -1.2
1,881,392 - DvMF_1526 0.78 +0.8
1,881,402 - DvMF_1526 0.79 +0.7
1,881,949 + DvMF_1527 0.10 +1.2
1,882,070 + DvMF_1527 0.24 -0.7
1,882,234 + DvMF_1527 0.44 -0.0
1,882,403 - DvMF_1527 0.63 -0.3
1,882,462 - DvMF_1527 0.70 -0.2
1,883,307 - -1.6
1,883,422 - DvMF_1528 0.14 -1.4
1,883,587 - DvMF_1528 0.25 +0.0
1,883,594 + DvMF_1528 0.25 -1.1
1,883,662 + DvMF_1528 0.30 -0.9
1,883,670 - DvMF_1528 0.30 -0.6

Or see this region's nucleotide sequence