Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1453

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplA and rplJ are separated by 184 nucleotidesrplJ and rplL are separated by 56 nucleotides DvMF_1452: rplA - 50S ribosomal protein L1 (RefSeq), at 1,773,336 to 1,774,043 rplA DvMF_1453: rplJ - 50S ribosomal protein L10 (RefSeq), at 1,774,228 to 1,774,749 rplJ DvMF_1454: rplL - 50S ribosomal protein L7/L12 (RefSeq), at 1,774,806 to 1,775,189 rplL Position (kb) 1774 1775Strain fitness (log2 ratio) -2 -1 0 1at 1775.421 kb on - strandat 1775.572 kb on + strandat 1775.573 kb on - strandat 1775.630 kb on + strandat 1775.630 kb on + strandat 1775.638 kb on - strandat 1775.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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1,775,421 - +0.0
1,775,572 + -0.8
1,775,573 - -2.5
1,775,630 + -0.6
1,775,630 + -0.6
1,775,638 - -0.7
1,775,648 - -0.2

Or see this region's nucleotide sequence