Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1143 and DvMF_1144 are separated by 124 nucleotides DvMF_1144 and DvMF_1145 overlap by 4 nucleotides DvMF_1145 and DvMF_1146 are separated by 532 nucleotides
DvMF_1143: DvMF_1143 - flavodoxin (RefSeq), at 1,403,253 to 1,403,699
_1143
DvMF_1144: DvMF_1144 - hypothetical protein (RefSeq), at 1,403,824 to 1,404,039
_1144
DvMF_1145: DvMF_1145 - hypothetical protein (RefSeq), at 1,404,036 to 1,404,221
_1145
DvMF_1146: DvMF_1146 - hypothetical protein (RefSeq), at 1,404,754 to 1,405,446
_1146
Position (kb)
1403
1404
1405 Strain fitness (log2 ratio)
-2
-1
0
1 at 1403.026 kb on + strand at 1403.214 kb on - strand at 1403.329 kb on + strand, within DvMF_1143 at 1403.412 kb on - strand, within DvMF_1143 at 1403.702 kb on - strand at 1403.783 kb on + strand at 1403.815 kb on - strand at 1403.829 kb on - strand at 1403.835 kb on - strand at 1403.948 kb on + strand, within DvMF_1144 at 1403.948 kb on + strand, within DvMF_1144 at 1403.976 kb on + strand, within DvMF_1144 at 1404.095 kb on + strand, within DvMF_1145 at 1404.555 kb on + strand at 1404.563 kb on - strand at 1404.676 kb on + strand at 1404.803 kb on - strand at 1404.854 kb on + strand, within DvMF_1146
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 1,403,026 + -0.5 1,403,214 - -1.3 1,403,329 + DvMF_1143 0.17 -0.1 1,403,412 - DvMF_1143 0.36 -0.7 1,403,702 - -0.3 1,403,783 + -0.7 1,403,815 - -0.6 1,403,829 - -0.9 1,403,835 - -1.2 1,403,948 + DvMF_1144 0.57 -0.7 1,403,948 + DvMF_1144 0.57 -1.1 1,403,976 + DvMF_1144 0.70 -0.7 1,404,095 + DvMF_1145 0.32 -0.9 1,404,555 + -1.4 1,404,563 - -1.9 1,404,676 + -0.3 1,404,803 - -0.3 1,404,854 + DvMF_1146 0.14 -0.4
Or see this region's nucleotide sequence