Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0947

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0946 and DvMF_0947 are separated by 245 nucleotidesDvMF_0947 and DvMF_0948 are separated by 429 nucleotides DvMF_0946: DvMF_0946 - peptidase M48 Ste24p (RefSeq), at 1,147,403 to 1,148,260 _0946 DvMF_0947: DvMF_0947 - thioesterase superfamily protein (RefSeq), at 1,148,506 to 1,148,973 _0947 DvMF_0948: DvMF_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,149,403 to 1,151,166 _0948 Position (kb) 1148 1149Strain fitness (log2 ratio) -2 -1 0 1at 1147.516 kb on - strand, within DvMF_0946at 1147.602 kb on + strand, within DvMF_0946at 1147.602 kb on + strand, within DvMF_0946at 1147.772 kb on + strand, within DvMF_0946at 1147.988 kb on + strand, within DvMF_0946at 1147.997 kb on - strand, within DvMF_0946at 1148.157 kb on + strand, within DvMF_0946at 1148.184 kb on - strandat 1148.202 kb on - strandat 1148.307 kb on + strandat 1148.320 kb on - strandat 1148.444 kb on + strandat 1148.488 kb on + strandat 1148.568 kb on - strand, within DvMF_0947at 1149.065 kb on + strandat 1149.222 kb on - strandat 1149.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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1,147,516 - DvMF_0946 0.13 -0.1
1,147,602 + DvMF_0946 0.23 -0.5
1,147,602 + DvMF_0946 0.23 +1.0
1,147,772 + DvMF_0946 0.43 -1.1
1,147,988 + DvMF_0946 0.68 -1.1
1,147,997 - DvMF_0946 0.69 -0.8
1,148,157 + DvMF_0946 0.88 -0.6
1,148,184 - -0.5
1,148,202 - -1.0
1,148,307 + -0.3
1,148,320 - +1.6
1,148,444 + +1.2
1,148,488 + -0.6
1,148,568 - DvMF_0947 0.13 -0.7
1,149,065 + -1.9
1,149,222 - -0.7
1,149,401 - -0.6

Or see this region's nucleotide sequence