Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0529 and DvMF_0530 are separated by 319 nucleotides DvMF_0530 and DvMF_0531 are separated by 159 nucleotides DvMF_0531 and DvMF_0532 are separated by 48 nucleotides
DvMF_0529: DvMF_0529 - aldo/keto reductase (RefSeq), at 624,999 to 626,201
_0529
DvMF_0530: DvMF_0530 - transcriptional regulator, AraC family (RefSeq), at 626,521 to 627,399
_0530
DvMF_0531: DvMF_0531 - hypothetical protein (RefSeq), at 627,559 to 627,981
_0531
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1 at 625.566 kb on + strand, within DvMF_0529 at 625.610 kb on + strand, within DvMF_0529 at 625.618 kb on + strand, within DvMF_0529 at 625.618 kb on - strand, within DvMF_0529 at 625.618 kb on - strand, within DvMF_0529 at 625.685 kb on + strand, within DvMF_0529 at 625.782 kb on + strand, within DvMF_0529 at 625.783 kb on + strand, within DvMF_0529 at 625.819 kb on - strand, within DvMF_0529 at 626.196 kb on - strand at 626.201 kb on - strand at 626.328 kb on + strand at 626.714 kb on + strand, within DvMF_0530 at 626.890 kb on - strand, within DvMF_0530 at 626.956 kb on + strand, within DvMF_0530 at 627.140 kb on - strand, within DvMF_0530 at 627.971 kb on + strand at 628.131 kb on - strand at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 625,566 + DvMF_0529 0.47 -0.4 625,610 + DvMF_0529 0.51 +1.5 625,618 + DvMF_0529 0.51 -0.2 625,618 - DvMF_0529 0.51 +0.3 625,618 - DvMF_0529 0.51 -1.4 625,685 + DvMF_0529 0.57 -0.4 625,782 + DvMF_0529 0.65 -0.3 625,783 + DvMF_0529 0.65 -1.0 625,819 - DvMF_0529 0.68 -0.7 626,196 - -0.7 626,201 - -0.7 626,328 + -1.3 626,714 + DvMF_0530 0.22 -1.9 626,890 - DvMF_0530 0.42 -0.7 626,956 + DvMF_0530 0.49 -0.4 627,140 - DvMF_0530 0.70 -1.0 627,971 + +0.4 628,131 - -0.4 628,164 + DvMF_0532 0.13 -0.6 628,396 - DvMF_0532 0.35 -0.6 628,396 - DvMF_0532 0.35 -0.6
Or see this region's nucleotide sequence