Experiment: 2 days starvation 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0336 and DvMF_0337 are separated by 833 nucleotides DvMF_0337 and DvMF_0338 are separated by 179 nucleotides DvMF_0338 and DvMF_0339 are separated by 119 nucleotides
DvMF_0336: DvMF_0336 - transcriptional regulator, TetR family (RefSeq), at 392,561 to 393,136
_0336
DvMF_0337: DvMF_0337 - phospholipid/glycerol acyltransferase (RefSeq), at 393,970 to 394,812
_0337
DvMF_0338: DvMF_0338 - glycosyl transferase, group 2 family protein (RefSeq), at 394,992 to 395,663
_0338
DvMF_0339: DvMF_0339 - recombination factor protein RarA (RefSeq), at 395,783 to 397,009
_0339
Position (kb) 393
394
395 Strain fitness (log2 ratio) -1
0
1 at 392.970 kb on - strand, within DvMF_0336 at 393.224 kb on - strand at 393.298 kb on + strand at 393.406 kb on + strand at 393.406 kb on + strand at 393.660 kb on + strand at 393.752 kb on + strand at 393.936 kb on - strand at 394.860 kb on + strand at 395.343 kb on - strand, within DvMF_0338 at 395.410 kb on + strand, within DvMF_0338 at 395.594 kb on + strand, within DvMF_0338 at 395.602 kb on - strand at 395.716 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2 days starvation 37C remove 392,970 - DvMF_0336 0.71 -0.9 393,224 - -1.1 393,298 + -0.7 393,406 + -0.4 393,406 + -0.7 393,660 + -0.6 393,752 + -0.1 393,936 - -0.7 394,860 + +0.4 395,343 - DvMF_0338 0.52 -0.2 395,410 + DvMF_0338 0.62 -1.0 395,594 + DvMF_0338 0.90 -0.0 395,602 - -0.6 395,716 + -0.2
Or see this region's nucleotide sequence