Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0163

Experiment: 2 days starvation 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0162 and DvMF_0163 are separated by 335 nucleotidesDvMF_0163 and DvMF_0164 are separated by 81 nucleotides DvMF_0162: DvMF_0162 - hypothetical protein (RefSeq), at 176,913 to 178,202 _0162 DvMF_0163: DvMF_0163 - no description, at 178,538 to 178,755 _0163 DvMF_0164: DvMF_0164 - hypothetical protein (RefSeq), at 178,837 to 179,658 _0164 Position (kb) 178 179Strain fitness (log2 ratio) -1 0 1at 177.642 kb on - strand, within DvMF_0162at 177.764 kb on - strand, within DvMF_0162at 177.871 kb on - strand, within DvMF_0162at 177.940 kb on + strand, within DvMF_0162at 177.948 kb on - strand, within DvMF_0162at 177.976 kb on + strand, within DvMF_0162at 177.984 kb on - strand, within DvMF_0162at 177.984 kb on - strand, within DvMF_0162at 178.104 kb on - strandat 178.291 kb on - strandat 178.319 kb on + strandat 178.415 kb on + strandat 178.591 kb on + strand, within DvMF_0163at 178.591 kb on + strand, within DvMF_0163at 178.591 kb on + strand, within DvMF_0163at 178.599 kb on - strand, within DvMF_0163at 178.788 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.833 kb on - strandat 178.853 kb on - strandat 178.882 kb on - strandat 178.962 kb on + strand, within DvMF_0164at 179.071 kb on - strand, within DvMF_0164at 179.499 kb on + strand, within DvMF_0164at 179.523 kb on + strand, within DvMF_0164

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 days starvation 37C
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177,642 - DvMF_0162 0.57 -0.4
177,764 - DvMF_0162 0.66 -1.5
177,871 - DvMF_0162 0.74 -0.2
177,940 + DvMF_0162 0.80 -0.7
177,948 - DvMF_0162 0.80 -1.4
177,976 + DvMF_0162 0.82 +0.4
177,984 - DvMF_0162 0.83 -1.4
177,984 - DvMF_0162 0.83 -0.9
178,104 - -0.2
178,291 - -0.6
178,319 + -1.0
178,415 + -0.6
178,591 + DvMF_0163 0.24 -0.5
178,591 + DvMF_0163 0.24 -1.4
178,591 + DvMF_0163 0.24 -0.5
178,599 - DvMF_0163 0.28 -0.9
178,788 + -0.6
178,796 - -0.7
178,796 - -0.8
178,833 - -0.0
178,853 - -0.4
178,882 - -0.2
178,962 + DvMF_0164 0.15 -0.6
179,071 - DvMF_0164 0.28 -0.9
179,499 + DvMF_0164 0.81 -0.4
179,523 + DvMF_0164 0.83 -0.9

Or see this region's nucleotide sequence