Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3363

Experiment: BHIS with Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3362 and BT3363 are separated by 31 nucleotidesBT3363 and BT3364 are separated by 40 nucleotidesBT3364 and BT3365 are separated by 20 nucleotides BT3362: BT3362 - heptosyltransferase (NCBI ptt file), at 4,336,913 to 4,337,944 BT3362 BT3363: BT3363 - lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file), at 4,337,976 to 4,338,950 BT3363 BT3364: BT3364 - hypothetical protein (NCBI ptt file), at 4,338,991 to 4,339,734 BT3364 BT3365: BT3365 - putative glycosyltransferase (NCBI ptt file), at 4,339,755 to 4,341,794 BT3365 Position (kb) 4337 4338 4339Strain fitness (log2 ratio) -3 -2 -1 0 1at 4338.020 kb on + strandat 4338.040 kb on + strandat 4338.136 kb on + strand, within BT3363at 4338.184 kb on + strand, within BT3363at 4338.365 kb on + strand, within BT3363at 4338.615 kb on + strand, within BT3363at 4339.732 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Vancomycin 0.016 mg/ml
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4,338,020 + -1.0
4,338,040 + -2.6
4,338,136 + BT3363 0.16 -1.7
4,338,184 + BT3363 0.21 +1.3
4,338,365 + BT3363 0.40 -2.3
4,338,615 + BT3363 0.66 -0.0
4,339,732 + -2.9

Or see this region's nucleotide sequence