Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2118

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
2,663,459	-		BT2117	0.32	+1.0
2,663,464	+		BT2117	0.32	-1.3
2,663,630	+		BT2117	0.44	-0.8
2,663,660	+		BT2117	0.46	-0.4
2,663,663	-		BT2117	0.47	+0.6
2,663,733	-		BT2117	0.52	+1.0
2,663,831	-		BT2117	0.59	-2.1
2,663,878	+		BT2117	0.62	+1.0
2,663,879	-		BT2117	0.62	-1.1
2,663,992	+		BT2117	0.71	+1.1
2,664,012	+		BT2117	0.72	+1.0
2,664,025	+		BT2117	0.73	-0.0
2,664,073	+		BT2117	0.77	+1.8
2,664,118	-		BT2117	0.80	+0.2
2,664,165	-		BT2117	0.83	+0.3
2,664,166	+		BT2117	0.83	-0.3
2,664,166	+		BT2117	0.83	+0.7
2,664,167	-		BT2117	0.83	+0.8
2,664,189	-		BT2117	0.85	-1.6
2,664,212	+		BT2117	0.87	-0.5
2,664,213	-		BT2117	0.87	-0.8
2,664,214	+		BT2117	0.87	-2.0
2,664,278	-				+0.2
2,664,484	+				-0.8
2,664,485	-				-0.5
2,664,508	+				-2.0
2,664,509	-				-0.5
2,664,541	+				-0.9
2,664,541	+				-1.8
2,664,541	+				+2.0
2,664,676	+				-0.1
2,664,801	+		BT2118	0.13	+0.2
2,664,817	+		BT2118	0.14	-0.0
2,664,817	+		BT2118	0.14	-0.3
2,664,817	+		BT2118	0.14	-0.8
2,664,818	-		BT2118	0.14	+1.4
2,664,818	-		BT2118	0.14	+0.4
2,664,841	+		BT2118	0.14	-1.0
2,664,877	+		BT2118	0.16	+1.6
2,664,920	-		BT2118	0.17	+0.5
2,665,266	+		BT2118	0.28	-1.9
2,665,270	+		BT2118	0.28	-2.2
2,665,343	+		BT2118	0.30	+1.0
2,665,343	+		BT2118	0.30	+1.9
2,665,343	+		BT2118	0.30	-1.7
2,665,343	+		BT2118	0.30	-0.9
2,665,344	-		BT2118	0.30	+0.5
2,665,344	-		BT2118	0.30	-0.0
2,665,389	+		BT2118	0.32	+0.8
2,665,390	-		BT2118	0.32	+0.8
2,665,602	+		BT2118	0.39	+4.4
2,665,602	+		BT2118	0.39	+1.6
2,665,602	+		BT2118	0.39	+0.7
2,665,621	+		BT2118	0.39	+0.8
2,665,622	-		BT2118	0.39	-0.0
2,665,624	+		BT2118	0.39	-2.0
2,665,656	-		BT2118	0.40	-0.9
2,665,692	-		BT2118	0.41	+2.0
2,665,813	-		BT2118	0.45	-2.2
2,665,845	+		BT2118	0.46	-1.8
2,665,846	-		BT2118	0.46	-1.7
2,665,857	+		BT2118	0.47	+1.0
2,665,858	-		BT2118	0.47	+0.8
2,665,858	-		BT2118	0.47	-0.0
2,665,964	-		BT2118	0.50	-0.6
2,666,008	-		BT2118	0.52	-0.0
2,666,008	-		BT2118	0.52	-0.1
2,666,079	-		BT2118	0.54	-0.0
2,666,079	-		BT2118	0.54	-1.6
2,666,131	+		BT2118	0.55	-0.8
2,666,135	+		BT2118	0.56	-0.6
2,666,294	+		BT2118	0.61	+0.4
2,666,295	-		BT2118	0.61	+0.0
2,666,308	+		BT2118	0.61	-0.9
2,666,444	-		BT2118	0.65	+1.5
2,666,492	-		BT2118	0.67	+0.8
2,666,566	+		BT2118	0.69	-2.3
2,666,624	+		BT2118	0.71	-1.3
2,666,730	+		BT2118	0.75	+1.0
2,666,798	-		BT2118	0.77	-0.6
2,666,798	-				-0.0
2,666,849	-		BT2118	0.78	+2.0
2,666,878	+		BT2118	0.79	-2.6
2,666,908	+		BT2118	0.80	+0.6
2,667,055	-		BT2118	0.85	+0.2
2,667,293	-				-0.2
2,667,296	+				+1.0
2,667,297	-				+1.0
2,667,310	+				-0.3
2,667,514	+				-2.2
2,667,574	+				+1.4
2,667,725	+		BT2119	0.19	-2.2
2,667,804	+		BT2119	0.26	+0.4
2,667,886	-		BT2119	0.34	+1.0
2,667,887	+		BT2119	0.34	+0.3
2,667,887	+		BT2119	0.34	+1.0
2,667,888	-		BT2119	0.34	-0.9
2,667,888	-		BT2119	0.34	+0.2
2,667,967	-		BT2119	0.41	-0.6
2,667,967	-		BT2119	0.41	+1.1
2,668,000	-		BT2119	0.44	+0.2
2,668,001	+		BT2119	0.44	-0.8
2,668,002	-		BT2119	0.44	-2.0
2,668,002	-		BT2119	0.44	+0.5
2,668,111	+		BT2119	0.55	-2.0
2,668,112	-		BT2119	0.55	+0.8
2,668,116	-		BT2119	0.55	-0.3
2,668,133	+		BT2119	0.57	-0.5
2,668,133	+		BT2119	0.57	-0.6
2,668,134	-		BT2119	0.57	-1.2
2,668,134	-		BT2119	0.57	-1.7
2,668,143	+		BT2119	0.58	-1.3
2,668,146	-		BT2119	0.58	-0.7
2,668,172	+		BT2119	0.60	-2.0
2,668,199	+		BT2119	0.63	-1.3
2,668,231	+		BT2119	0.66	-1.4
2,668,231	+		BT2119	0.66	-1.0
2,668,364	+		BT2119	0.78	-0.1
2,668,365	-		BT2119	0.78	-1.7
2,668,365	-		BT2119	0.78	+0.5
2,668,393	+		BT2119	0.81	+0.4
2,668,417	+		BT2119	0.83	-2.6
2,668,418	-		BT2119	0.83	-3.3
2,668,425	+		BT2119	0.84	-1.5
2,668,425	+		BT2119	0.84	-2.7
2,668,491	+				-1.8