Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1613

Experiment: BHIS with Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Vancomycin 0.016 mg/ml
1,983,047	-				-0.7
1,983,081	+				+0.6
1,983,081	+				-1.5
1,983,105	+				-0.9
1,983,505	+		BT1612	0.19	+1.6
1,983,523	+		BT1612	0.25	+0.2
1,983,535	-		BT1612	0.28	-0.5
1,983,538	+		BT1612	0.29	-0.1
1,983,575	+		BT1612	0.40	-0.0
1,983,575	+		BT1612	0.40	+1.4
1,983,658	-		BT1612	0.64	-0.6
1,983,658	-		BT1612	0.64	-2.0
1,983,722	+		BT1612	0.83	-0.5
1,983,734	-		BT1612	0.86	+0.8
1,983,734	-				-0.0
1,983,778	+				-0.7
1,983,779	-				+0.2
1,983,825	+				+0.6
1,983,825	+				+2.0
1,983,877	+				-0.3
1,983,896	-				+4.4
1,983,896	-				-0.0
1,983,915	+				+1.7
1,983,935	+		BT1613	0.10	+1.1
1,983,935	+		BT1613	0.10	+0.7
1,983,936	-		BT1613	0.10	+1.8
1,983,937	+		BT1613	0.10	+1.5
1,983,937	+		BT1613	0.10	+4.1
1,983,938	-		BT1613	0.11	+2.4
1,983,938	-		BT1613	0.11	+2.1
1,983,945	-		BT1613	0.12	+0.3
1,983,992	+		BT1613	0.20	+1.9
1,983,992	+		BT1613	0.20	+1.5
1,984,008	-		BT1613	0.23	-0.2
1,984,010	+		BT1613	0.23	+3.0
1,984,058	+		BT1613	0.31	+3.0
1,984,059	-		BT1613	0.31	+3.1
1,984,064	+		BT1613	0.32	+0.6
1,984,064	+		BT1613	0.32	+0.6
1,984,065	-		BT1613	0.32	+3.3
1,984,094	+		BT1613	0.37	+0.1
1,984,141	+		BT1613	0.46	+2.6
1,984,141	+		BT1613	0.46	+0.5
1,984,142	-		BT1613	0.46	+0.1
1,984,303	+		BT1613	0.73	+3.1
1,984,304	-		BT1613	0.74	+3.2
1,984,304	-		BT1613	0.74	-0.3
1,984,320	-		BT1613	0.76	+2.9
1,984,320	-		BT1613	0.76	-0.2
1,984,323	+		BT1613	0.77	+4.1
1,984,333	+		BT1613	0.79	+0.3
1,984,334	-		BT1613	0.79	+0.9
1,984,334	-		BT1613	0.79	+3.5
1,984,380	-		BT1613	0.87	+1.9
1,984,395	-		BT1613	0.89	+3.2
1,984,447	-				+3.8
1,984,463	-				+2.5
1,984,468	-				+3.5
1,984,513	+				+0.7
1,984,513	+				+3.5
1,984,686	-		BT1614	0.77	+1.0
1,984,686	-		BT1614	0.77	+0.4
1,984,718	+				+1.4
1,984,846	+				+1.3
1,984,847	-				-2.3
1,984,847	-				+0.8
1,984,975	-		BT1615	0.13	-0.5
1,985,013	+		BT1615	0.15	-0.5
1,985,013	+		BT1615	0.15	+0.6
1,985,083	-		BT1615	0.19	-0.8
1,985,128	-		BT1615	0.22	-2.6
1,985,227	-		BT1615	0.29	+0.8