Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3294

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3291 and Ga0059261_3292 are separated by 73 nucleotidesGa0059261_3292 and Ga0059261_3293 are separated by 40 nucleotidesGa0059261_3293 and Ga0059261_3294 are separated by 93 nucleotidesGa0059261_3294 and Ga0059261_3295 are separated by 19 nucleotidesGa0059261_3295 and Ga0059261_3296 are separated by 11 nucleotides Ga0059261_3291: Ga0059261_3291 - PRC-barrel domain, at 3,420,223 to 3,420,621 _3291 Ga0059261_3292: Ga0059261_3292 - hypothetical protein, at 3,420,695 to 3,421,015 _3292 Ga0059261_3293: Ga0059261_3293 - hypothetical protein, at 3,421,056 to 3,421,415 _3293 Ga0059261_3294: Ga0059261_3294 - hypothetical protein, at 3,421,509 to 3,421,847 _3294 Ga0059261_3295: Ga0059261_3295 - Uncharacterized conserved protein, at 3,421,867 to 3,422,244 _3295 Ga0059261_3296: Ga0059261_3296 - aconitate hydratase 1, at 3,422,256 to 3,424,928 _3296 Position (kb) 3421 3422Strain fitness (log2 ratio) -2 -1 0 1 2at 3420.535 kb on + strand, within Ga0059261_3291at 3420.535 kb on + strand, within Ga0059261_3291at 3420.535 kb on + strand, within Ga0059261_3291at 3420.535 kb on + strand, within Ga0059261_3291at 3420.535 kb on + strand, within Ga0059261_3291at 3420.535 kb on + strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.536 kb on - strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.556 kb on + strand, within Ga0059261_3291at 3420.557 kb on - strand, within Ga0059261_3291at 3420.557 kb on - strand, within Ga0059261_3291at 3420.557 kb on - strand, within Ga0059261_3291at 3420.557 kb on - strand, within Ga0059261_3291at 3420.557 kb on - strand, within Ga0059261_3291at 3420.557 kb on - strandat 3420.557 kb on - strand, within Ga0059261_3291at 3420.559 kb on + strand, within Ga0059261_3291at 3420.559 kb on + strand, within Ga0059261_3291at 3420.559 kb on + strand, within Ga0059261_3291at 3420.560 kb on - strand, within Ga0059261_3291at 3420.560 kb on - strand, within Ga0059261_3291at 3420.619 kb on + strandat 3420.696 kb on + strandat 3420.880 kb on + strand, within Ga0059261_3292at 3420.880 kb on + strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.881 kb on - strand, within Ga0059261_3292at 3420.963 kb on + strand, within Ga0059261_3292at 3420.963 kb on + strand, within Ga0059261_3292at 3420.963 kb on + strand, within Ga0059261_3292at 3420.963 kb on + strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3420.964 kb on - strand, within Ga0059261_3292at 3421.026 kb on + strandat 3421.026 kb on + strandat 3421.026 kb on + strandat 3421.027 kb on - strandat 3421.027 kb on - strandat 3421.027 kb on - strandat 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.123 kb on + strand, within Ga0059261_3293at 3421.124 kb on - strand, within Ga0059261_3293at 3421.124 kb on - strand, within Ga0059261_3293at 3421.124 kb on - strand, within Ga0059261_3293at 3421.124 kb on - strand, within Ga0059261_3293at 3421.159 kb on + strand, within Ga0059261_3293at 3421.159 kb on + strand, within Ga0059261_3293at 3421.160 kb on - strand, within Ga0059261_3293at 3421.160 kb on - strand, within Ga0059261_3293at 3421.160 kb on - strand, within Ga0059261_3293at 3421.160 kb on - strand, within Ga0059261_3293at 3421.160 kb on - strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.291 kb on + strand, within Ga0059261_3293at 3421.292 kb on - strand, within Ga0059261_3293at 3421.292 kb on - strand, within Ga0059261_3293at 3421.292 kb on - strand, within Ga0059261_3293at 3421.292 kb on - strand, within Ga0059261_3293at 3421.309 kb on + strand, within Ga0059261_3293at 3421.310 kb on - strand, within Ga0059261_3293at 3421.310 kb on - strand, within Ga0059261_3293at 3421.310 kb on - strand, within Ga0059261_3293at 3421.348 kb on - strand, within Ga0059261_3293at 3421.472 kb on + strandat 3421.472 kb on + strandat 3421.473 kb on - strandat 3421.473 kb on - strandat 3421.473 kb on - strandat 3421.474 kb on + strandat 3421.474 kb on + strandat 3421.474 kb on + strandat 3421.475 kb on - strandat 3421.475 kb on - strandat 3421.530 kb on + strandat 3421.530 kb on + strandat 3421.530 kb on + strandat 3421.530 kb on + strandat 3421.531 kb on - strandat 3421.531 kb on - strandat 3421.531 kb on - strandat 3421.531 kb on - strandat 3421.539 kb on + strandat 3421.539 kb on + strandat 3421.539 kb on + strandat 3421.539 kb on + strandat 3421.539 kb on + strandat 3421.540 kb on - strandat 3421.540 kb on - strandat 3421.540 kb on - strandat 3421.540 kb on - strandat 3421.540 kb on - strandat 3421.868 kb on + strandat 3421.869 kb on - strandat 3421.869 kb on - strandat 3422.052 kb on + strand, within Ga0059261_3295at 3422.052 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.054 kb on + strand, within Ga0059261_3295at 3422.055 kb on - strand, within Ga0059261_3295at 3422.055 kb on - strand, within Ga0059261_3295at 3422.055 kb on - strand, within Ga0059261_3295at 3422.055 kb on - strand, within Ga0059261_3295at 3422.055 kb on - strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.153 kb on + strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strandat 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.154 kb on - strand, within Ga0059261_3295at 3422.257 kb on + strandat 3422.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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3,420,535 + Ga0059261_3291 0.78 -0.1
3,420,535 + Ga0059261_3291 0.78 -0.3
3,420,535 + Ga0059261_3291 0.78 +0.7
3,420,535 + Ga0059261_3291 0.78 -0.5
3,420,535 + Ga0059261_3291 0.78 +0.4
3,420,535 + Ga0059261_3291 0.78 +0.4
3,420,536 - Ga0059261_3291 0.78 -0.6
3,420,536 - Ga0059261_3291 0.78 +0.5
3,420,536 - Ga0059261_3291 0.78 +0.5
3,420,536 - Ga0059261_3291 0.78 -1.3
3,420,536 - Ga0059261_3291 0.78 +1.2
3,420,536 - Ga0059261_3291 0.78 -0.3
3,420,536 - Ga0059261_3291 0.78 +0.2
3,420,536 - Ga0059261_3291 0.78 -0.3
3,420,536 - Ga0059261_3291 0.78 -0.2
3,420,536 - Ga0059261_3291 0.78 +0.1
3,420,536 - Ga0059261_3291 0.78 -1.4
3,420,556 + Ga0059261_3291 0.83 +0.2
3,420,556 + Ga0059261_3291 0.83 +0.2
3,420,556 + Ga0059261_3291 0.83 +0.1
3,420,556 + Ga0059261_3291 0.83 +0.0
3,420,556 + Ga0059261_3291 0.83 +1.5
3,420,556 + Ga0059261_3291 0.83 +0.6
3,420,556 + Ga0059261_3291 0.83 +0.4
3,420,556 + Ga0059261_3291 0.83 +0.3
3,420,557 - Ga0059261_3291 0.84 -0.2
3,420,557 - Ga0059261_3291 0.84 +0.5
3,420,557 - Ga0059261_3291 0.84 -0.9
3,420,557 - Ga0059261_3291 0.84 +1.5
3,420,557 - Ga0059261_3291 0.84 -1.3
3,420,557 - +2.3
3,420,557 - Ga0059261_3291 0.84 +0.2
3,420,559 + Ga0059261_3291 0.84 +1.9
3,420,559 + Ga0059261_3291 0.84 -0.3
3,420,559 + Ga0059261_3291 0.84 +0.6
3,420,560 - Ga0059261_3291 0.84 -0.1
3,420,560 - Ga0059261_3291 0.84 +0.2
3,420,619 + -1.2
3,420,696 + +0.5
3,420,880 + Ga0059261_3292 0.58 +0.3
3,420,880 + Ga0059261_3292 0.58 -0.4
3,420,881 - Ga0059261_3292 0.58 -0.5
3,420,881 - Ga0059261_3292 0.58 -0.6
3,420,881 - Ga0059261_3292 0.58 -0.1
3,420,881 - Ga0059261_3292 0.58 -0.6
3,420,881 - Ga0059261_3292 0.58 +1.6
3,420,881 - Ga0059261_3292 0.58 -1.5
3,420,881 - Ga0059261_3292 0.58 +1.4
3,420,963 + Ga0059261_3292 0.83 +0.6
3,420,963 + Ga0059261_3292 0.83 +0.1
3,420,963 + Ga0059261_3292 0.83 +1.3
3,420,963 + Ga0059261_3292 0.83 +1.3
3,420,964 - Ga0059261_3292 0.84 +0.1
3,420,964 - Ga0059261_3292 0.84 +0.3
3,420,964 - Ga0059261_3292 0.84 +0.9
3,420,964 - Ga0059261_3292 0.84 -0.7
3,420,964 - Ga0059261_3292 0.84 +0.6
3,420,964 - Ga0059261_3292 0.84 +0.5
3,420,964 - Ga0059261_3292 0.84 +0.5
3,420,964 - Ga0059261_3292 0.84 +0.8
3,421,026 + +0.3
3,421,026 + +1.0
3,421,026 + +0.9
3,421,027 - +0.2
3,421,027 - -0.2
3,421,027 - -0.3
3,421,123 + Ga0059261_3293 0.19 -0.8
3,421,123 + Ga0059261_3293 0.19 +0.3
3,421,123 + Ga0059261_3293 0.19 +0.3
3,421,123 + Ga0059261_3293 0.19 +2.0
3,421,123 + Ga0059261_3293 0.19 -1.9
3,421,123 + Ga0059261_3293 0.19 +2.3
3,421,123 + Ga0059261_3293 0.19 +0.6
3,421,124 - Ga0059261_3293 0.19 +1.2
3,421,124 - Ga0059261_3293 0.19 -0.2
3,421,124 - Ga0059261_3293 0.19 -0.8
3,421,124 - Ga0059261_3293 0.19 -0.2
3,421,159 + Ga0059261_3293 0.29 -0.3
3,421,159 + Ga0059261_3293 0.29 +0.9
3,421,160 - Ga0059261_3293 0.29 -0.5
3,421,160 - Ga0059261_3293 0.29 +0.7
3,421,160 - Ga0059261_3293 0.29 +0.4
3,421,160 - Ga0059261_3293 0.29 -0.1
3,421,160 - Ga0059261_3293 0.29 -0.9
3,421,291 + Ga0059261_3293 0.65 -0.1
3,421,291 + Ga0059261_3293 0.65 +0.7
3,421,291 + Ga0059261_3293 0.65 +0.7
3,421,291 + Ga0059261_3293 0.65 -1.5
3,421,291 + Ga0059261_3293 0.65 -0.5
3,421,291 + Ga0059261_3293 0.65 +0.3
3,421,292 - Ga0059261_3293 0.66 -0.0
3,421,292 - Ga0059261_3293 0.66 -0.9
3,421,292 - Ga0059261_3293 0.66 -0.4
3,421,292 - Ga0059261_3293 0.66 -0.2
3,421,309 + Ga0059261_3293 0.70 +0.4
3,421,310 - Ga0059261_3293 0.71 +0.9
3,421,310 - Ga0059261_3293 0.71 -0.4
3,421,310 - Ga0059261_3293 0.71 +0.3
3,421,348 - Ga0059261_3293 0.81 +0.5
3,421,472 + +1.3
3,421,472 + -0.3
3,421,473 - +2.3
3,421,473 - -0.4
3,421,473 - -0.3
3,421,474 + -0.8
3,421,474 + +0.5
3,421,474 + -0.4
3,421,475 - +0.6
3,421,475 - -1.2
3,421,530 + -1.9
3,421,530 + -0.0
3,421,530 + -0.6
3,421,530 + -0.2
3,421,531 - +0.6
3,421,531 - +0.4
3,421,531 - +0.7
3,421,531 - -0.0
3,421,539 + -0.5
3,421,539 + +1.4
3,421,539 + +1.3
3,421,539 + -0.2
3,421,539 + -0.2
3,421,540 - +0.1
3,421,540 - +0.8
3,421,540 - -1.0
3,421,540 - -0.0
3,421,540 - -1.0
3,421,868 + -0.7
3,421,869 - -0.0
3,421,869 - +0.5
3,422,052 + Ga0059261_3295 0.49 -0.2
3,422,052 + Ga0059261_3295 0.49 -0.6
3,422,054 + Ga0059261_3295 0.49 -0.6
3,422,054 + Ga0059261_3295 0.49 -1.7
3,422,054 + Ga0059261_3295 0.49 +0.5
3,422,054 + Ga0059261_3295 0.49 +0.3
3,422,054 + Ga0059261_3295 0.49 +0.8
3,422,054 + Ga0059261_3295 0.49 +0.2
3,422,054 + Ga0059261_3295 0.49 +1.1
3,422,054 + Ga0059261_3295 0.49 -0.2
3,422,054 + Ga0059261_3295 0.49 -0.1
3,422,054 + Ga0059261_3295 0.49 +1.2
3,422,054 + Ga0059261_3295 0.49 +0.2
3,422,054 + Ga0059261_3295 0.49 -0.8
3,422,055 - Ga0059261_3295 0.50 -0.4
3,422,055 - Ga0059261_3295 0.50 -0.4
3,422,055 - Ga0059261_3295 0.50 -0.4
3,422,055 - Ga0059261_3295 0.50 +0.6
3,422,055 - Ga0059261_3295 0.50 -0.7
3,422,153 + Ga0059261_3295 0.76 -0.3
3,422,153 + Ga0059261_3295 0.76 +0.6
3,422,153 + Ga0059261_3295 0.76 +0.5
3,422,153 + Ga0059261_3295 0.76 +0.1
3,422,153 + Ga0059261_3295 0.76 +0.3
3,422,153 + Ga0059261_3295 0.76 +1.3
3,422,154 - Ga0059261_3295 0.76 -0.1
3,422,154 - Ga0059261_3295 0.76 +0.6
3,422,154 - +2.3
3,422,154 - Ga0059261_3295 0.76 -0.4
3,422,154 - Ga0059261_3295 0.76 -0.2
3,422,154 - Ga0059261_3295 0.76 +0.2
3,422,154 - Ga0059261_3295 0.76 +1.5
3,422,154 - Ga0059261_3295 0.76 -0.7
3,422,154 - Ga0059261_3295 0.76 +1.3
3,422,154 - Ga0059261_3295 0.76 +0.4
3,422,154 - Ga0059261_3295 0.76 -0.2
3,422,154 - Ga0059261_3295 0.76 -1.0
3,422,257 + +0.1
3,422,258 - +1.9

Or see this region's nucleotide sequence