Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32090

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32085 and AZOBR_RS32090 overlap by 28 nucleotidesAZOBR_RS32090 and AZOBR_RS32095 overlap by 4 nucleotides AZOBR_RS32085: AZOBR_RS32085 - hypothetical protein, at 558,568 to 566,643 _RS32085 AZOBR_RS32090: AZOBR_RS32090 - putative Poly(beta-D-mannuronate) C5 epimerase 3, at 566,616 to 571,850 _RS32090 AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386 _RS32095 Position (kb) 566 567 568 569 570 571 572Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 566.141 kb on + strandat 566.144 kb on + strandat 566.145 kb on - strandat 566.270 kb on + strandat 566.271 kb on - strandat 566.571 kb on - strandat 566.571 kb on - strandat 566.597 kb on + strandat 566.597 kb on + strandat 566.598 kb on - strandat 566.698 kb on + strandat 566.698 kb on + strandat 566.698 kb on + strandat 566.699 kb on - strandat 566.699 kb on - strandat 567.113 kb on + strandat 567.114 kb on - strandat 567.114 kb on - strandat 567.241 kb on + strand, within AZOBR_RS32090at 567.241 kb on + strand, within AZOBR_RS32090at 567.241 kb on + strand, within AZOBR_RS32090at 567.242 kb on - strand, within AZOBR_RS32090at 567.468 kb on + strand, within AZOBR_RS32090at 567.468 kb on + strand, within AZOBR_RS32090at 567.468 kb on + strand, within AZOBR_RS32090at 567.468 kb on + strand, within AZOBR_RS32090at 567.469 kb on - strand, within AZOBR_RS32090at 567.691 kb on + strand, within AZOBR_RS32090at 567.691 kb on + strand, within AZOBR_RS32090at 567.691 kb on + strand, within AZOBR_RS32090at 567.692 kb on - strand, within AZOBR_RS32090at 568.597 kb on + strand, within AZOBR_RS32090at 568.597 kb on + strand, within AZOBR_RS32090at 568.598 kb on - strand, within AZOBR_RS32090at 568.598 kb on - strand, within AZOBR_RS32090at 568.647 kb on + strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.648 kb on - strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.723 kb on + strand, within AZOBR_RS32090at 568.724 kb on - strand, within AZOBR_RS32090at 568.724 kb on - strand, within AZOBR_RS32090at 568.724 kb on - strand, within AZOBR_RS32090at 568.724 kb on - strand, within AZOBR_RS32090at 568.801 kb on + strand, within AZOBR_RS32090at 568.802 kb on - strand, within AZOBR_RS32090at 568.802 kb on - strand, within AZOBR_RS32090at 568.802 kb on - strand, within AZOBR_RS32090at 569.113 kb on + strand, within AZOBR_RS32090at 569.114 kb on - strand, within AZOBR_RS32090at 569.114 kb on - strand, within AZOBR_RS32090at 569.594 kb on + strand, within AZOBR_RS32090at 569.595 kb on - strand, within AZOBR_RS32090at 569.595 kb on - strand, within AZOBR_RS32090at 569.653 kb on + strand, within AZOBR_RS32090at 569.689 kb on + strand, within AZOBR_RS32090at 569.689 kb on + strand, within AZOBR_RS32090at 569.689 kb on + strand, within AZOBR_RS32090at 569.689 kb on + strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.690 kb on - strand, within AZOBR_RS32090at 569.700 kb on - strand, within AZOBR_RS32090at 570.136 kb on + strand, within AZOBR_RS32090at 570.137 kb on - strand, within AZOBR_RS32090at 570.137 kb on - strand, within AZOBR_RS32090at 570.137 kb on - strand, within AZOBR_RS32090at 570.619 kb on + strand, within AZOBR_RS32090at 570.757 kb on + strand, within AZOBR_RS32090at 570.763 kb on + strand, within AZOBR_RS32090at 570.764 kb on - strand, within AZOBR_RS32090at 571.069 kb on + strand, within AZOBR_RS32090at 571.096 kb on - strand, within AZOBR_RS32090at 571.243 kb on + strand, within AZOBR_RS32090at 571.244 kb on - strand, within AZOBR_RS32090at 571.244 kb on - strand, within AZOBR_RS32090at 571.250 kb on - strand, within AZOBR_RS32090at 571.250 kb on - strand, within AZOBR_RS32090at 571.250 kb on - strand, within AZOBR_RS32090at 571.314 kb on - strand, within AZOBR_RS32090at 571.546 kb on + strandat 571.546 kb on + strandat 571.546 kb on + strandat 571.546 kb on + strandat 571.547 kb on - strandat 571.547 kb on - strandat 571.547 kb on - strandat 571.555 kb on + strandat 571.556 kb on - strandat 571.748 kb on - strandat 572.043 kb on + strand, within AZOBR_RS32095at 572.043 kb on + strand, within AZOBR_RS32095at 572.044 kb on - strand, within AZOBR_RS32095at 572.044 kb on - strand, within AZOBR_RS32095at 572.044 kb on - strand, within AZOBR_RS32095at 572.272 kb on + strand, within AZOBR_RS32095at 572.272 kb on + strand, within AZOBR_RS32095at 572.272 kb on + strand, within AZOBR_RS32095at 572.272 kb on + strand, within AZOBR_RS32095at 572.273 kb on - strand, within AZOBR_RS32095at 572.273 kb on - strand, within AZOBR_RS32095at 572.530 kb on - strandat 572.586 kb on - strandat 572.656 kb on - strandat 572.661 kb on + strandat 572.662 kb on - strandat 572.820 kb on + strandat 572.820 kb on + strandat 572.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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566,141 + -0.6
566,144 + +1.2
566,145 - +0.6
566,270 + +0.1
566,271 - -0.6
566,571 - +0.9
566,571 - -2.0
566,597 + -0.5
566,597 + +1.1
566,598 - -0.1
566,698 + +0.6
566,698 + -1.6
566,698 + -0.1
566,699 - +0.7
566,699 - +0.4
567,113 + -0.4
567,114 - -0.2
567,114 - -0.8
567,241 + AZOBR_RS32090 0.12 +1.4
567,241 + AZOBR_RS32090 0.12 +0.0
567,241 + AZOBR_RS32090 0.12 -0.8
567,242 - AZOBR_RS32090 0.12 +0.8
567,468 + AZOBR_RS32090 0.16 +0.2
567,468 + AZOBR_RS32090 0.16 -0.3
567,468 + AZOBR_RS32090 0.16 +0.3
567,468 + AZOBR_RS32090 0.16 +0.5
567,469 - AZOBR_RS32090 0.16 -0.9
567,691 + AZOBR_RS32090 0.21 +0.0
567,691 + AZOBR_RS32090 0.21 +0.1
567,691 + AZOBR_RS32090 0.21 -0.1
567,692 - AZOBR_RS32090 0.21 -0.1
568,597 + AZOBR_RS32090 0.38 +0.0
568,597 + AZOBR_RS32090 0.38 -1.6
568,598 - AZOBR_RS32090 0.38 -0.6
568,598 - AZOBR_RS32090 0.38 -0.6
568,647 + AZOBR_RS32090 0.39 +1.8
568,648 - AZOBR_RS32090 0.39 +0.7
568,648 - AZOBR_RS32090 0.39 +0.2
568,648 - AZOBR_RS32090 0.39 -1.6
568,648 - AZOBR_RS32090 0.39 -0.3
568,648 - AZOBR_RS32090 0.39 -2.8
568,648 - AZOBR_RS32090 0.39 +0.9
568,648 - AZOBR_RS32090 0.39 +0.3
568,648 - AZOBR_RS32090 0.39 -0.5
568,723 + AZOBR_RS32090 0.40 -0.5
568,723 + AZOBR_RS32090 0.40 +1.2
568,723 + AZOBR_RS32090 0.40 +0.2
568,723 + AZOBR_RS32090 0.40 -0.2
568,723 + AZOBR_RS32090 0.40 +0.9
568,723 + AZOBR_RS32090 0.40 -0.1
568,723 + AZOBR_RS32090 0.40 -1.9
568,724 - AZOBR_RS32090 0.40 -1.1
568,724 - AZOBR_RS32090 0.40 +2.4
568,724 - AZOBR_RS32090 0.40 -0.1
568,724 - AZOBR_RS32090 0.40 +0.9
568,801 + AZOBR_RS32090 0.42 +1.4
568,802 - AZOBR_RS32090 0.42 +0.8
568,802 - AZOBR_RS32090 0.42 +0.2
568,802 - AZOBR_RS32090 0.42 +2.0
569,113 + AZOBR_RS32090 0.48 -0.1
569,114 - AZOBR_RS32090 0.48 +0.5
569,114 - AZOBR_RS32090 0.48 +0.1
569,594 + AZOBR_RS32090 0.57 -3.3
569,595 - AZOBR_RS32090 0.57 +1.8
569,595 - AZOBR_RS32090 0.57 -0.1
569,653 + AZOBR_RS32090 0.58 -1.0
569,689 + AZOBR_RS32090 0.59 -1.2
569,689 + AZOBR_RS32090 0.59 +0.3
569,689 + AZOBR_RS32090 0.59 +1.0
569,689 + AZOBR_RS32090 0.59 -1.6
569,690 - AZOBR_RS32090 0.59 +1.9
569,690 - AZOBR_RS32090 0.59 -0.0
569,690 - AZOBR_RS32090 0.59 -0.3
569,690 - AZOBR_RS32090 0.59 -1.3
569,690 - AZOBR_RS32090 0.59 -2.5
569,690 - AZOBR_RS32090 0.59 +0.0
569,700 - AZOBR_RS32090 0.59 +0.9
570,136 + AZOBR_RS32090 0.67 -2.1
570,137 - AZOBR_RS32090 0.67 -2.1
570,137 - AZOBR_RS32090 0.67 +0.8
570,137 - AZOBR_RS32090 0.67 -1.6
570,619 + AZOBR_RS32090 0.76 +0.5
570,757 + AZOBR_RS32090 0.79 -0.1
570,763 + AZOBR_RS32090 0.79 +0.7
570,764 - AZOBR_RS32090 0.79 -0.1
571,069 + AZOBR_RS32090 0.85 -0.7
571,096 - AZOBR_RS32090 0.86 -1.2
571,243 + AZOBR_RS32090 0.88 +0.2
571,244 - AZOBR_RS32090 0.88 -2.2
571,244 - AZOBR_RS32090 0.88 -0.5
571,250 - AZOBR_RS32090 0.89 -0.1
571,250 - AZOBR_RS32090 0.89 -0.3
571,250 - AZOBR_RS32090 0.89 -3.0
571,314 - AZOBR_RS32090 0.90 +0.1
571,546 + +0.5
571,546 + +0.3
571,546 + -1.3
571,546 + -0.3
571,547 - +0.6
571,547 - +2.2
571,547 - +1.1
571,555 + -0.7
571,556 - +0.3
571,748 - +3.3
572,043 + AZOBR_RS32095 0.36 +0.1
572,043 + AZOBR_RS32095 0.36 +0.6
572,044 - AZOBR_RS32095 0.36 -2.6
572,044 - AZOBR_RS32095 0.36 -0.3
572,044 - AZOBR_RS32095 0.36 -0.4
572,272 + AZOBR_RS32095 0.79 -2.6
572,272 + AZOBR_RS32095 0.79 +1.2
572,272 + AZOBR_RS32095 0.79 -0.7
572,272 + AZOBR_RS32095 0.79 -0.5
572,273 - AZOBR_RS32095 0.79 +4.1
572,273 - AZOBR_RS32095 0.79 -2.9
572,530 - +0.3
572,586 - -2.9
572,656 - -0.3
572,661 + -2.9
572,662 - +2.0
572,820 + -0.5
572,820 + +0.5
572,820 + -0.9

Or see this region's nucleotide sequence