Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31940

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31940 and AZOBR_RS31945 are separated by 162 nucleotides AZOBR_RS31940: AZOBR_RS31940 - NADH-quinone oxidoreductase subunit F, at 531,320 to 533,005 _RS31940 AZOBR_RS31945: AZOBR_RS31945 - oxalyl-CoA decarboxylase, at 533,168 to 534,925 _RS31945 Position (kb) 531 532 533 534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 530.495 kb on + strandat 530.495 kb on + strandat 530.591 kb on + strandat 530.592 kb on - strandat 530.592 kb on - strandat 530.619 kb on - strandat 531.206 kb on + strandat 531.318 kb on + strandat 531.318 kb on + strandat 531.318 kb on + strandat 531.319 kb on - strandat 531.319 kb on - strandat 531.706 kb on - strand, within AZOBR_RS31940at 531.706 kb on - strand, within AZOBR_RS31940at 531.744 kb on + strand, within AZOBR_RS31940at 531.744 kb on + strand, within AZOBR_RS31940at 531.745 kb on - strand, within AZOBR_RS31940at 531.825 kb on + strand, within AZOBR_RS31940at 531.826 kb on - strand, within AZOBR_RS31940at 532.041 kb on + strand, within AZOBR_RS31940at 532.041 kb on + strand, within AZOBR_RS31940at 532.042 kb on - strand, within AZOBR_RS31940at 532.042 kb on - strand, within AZOBR_RS31940at 532.158 kb on + strand, within AZOBR_RS31940at 532.158 kb on + strand, within AZOBR_RS31940at 532.158 kb on + strand, within AZOBR_RS31940at 532.159 kb on - strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.164 kb on + strand, within AZOBR_RS31940at 532.165 kb on - strand, within AZOBR_RS31940at 532.165 kb on - strand, within AZOBR_RS31940at 532.165 kb on - strand, within AZOBR_RS31940at 532.165 kb on - strand, within AZOBR_RS31940at 532.239 kb on + strand, within AZOBR_RS31940at 532.239 kb on + strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.461 kb on + strand, within AZOBR_RS31940at 532.461 kb on + strand, within AZOBR_RS31940at 532.462 kb on - strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.765 kb on - strand, within AZOBR_RS31940at 532.765 kb on - strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.783 kb on - strand, within AZOBR_RS31940at 532.851 kb on + strandat 532.852 kb on - strandat 533.087 kb on + strandat 533.153 kb on + strandat 533.154 kb on - strandat 533.154 kb on - strandat 533.158 kb on + strandat 533.169 kb on + strandat 533.169 kb on + strandat 533.170 kb on - strandat 533.170 kb on - strandat 533.170 kb on - strandat 533.308 kb on - strandat 533.442 kb on + strand, within AZOBR_RS31945at 533.442 kb on + strand, within AZOBR_RS31945at 533.442 kb on + strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.488 kb on - strand, within AZOBR_RS31945at 533.488 kb on - strand, within AZOBR_RS31945

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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530,495 + -0.1
530,495 + -0.0
530,591 + +0.6
530,592 - -0.7
530,592 - +0.7
530,619 - -0.5
531,206 + -0.3
531,318 + -3.1
531,318 + -2.3
531,318 + -0.4
531,319 - +1.6
531,319 - -2.2
531,706 - AZOBR_RS31940 0.23 +0.5
531,706 - AZOBR_RS31940 0.23 -2.0
531,744 + AZOBR_RS31940 0.25 +0.4
531,744 + AZOBR_RS31940 0.25 -1.7
531,745 - AZOBR_RS31940 0.25 +0.5
531,825 + AZOBR_RS31940 0.30 +1.6
531,826 - AZOBR_RS31940 0.30 -1.4
532,041 + AZOBR_RS31940 0.43 +0.1
532,041 + AZOBR_RS31940 0.43 +0.0
532,042 - AZOBR_RS31940 0.43 -0.5
532,042 - AZOBR_RS31940 0.43 -0.1
532,158 + AZOBR_RS31940 0.50 -0.4
532,158 + AZOBR_RS31940 0.50 +0.3
532,158 + AZOBR_RS31940 0.50 -1.2
532,159 - AZOBR_RS31940 0.50 +1.1
532,164 + AZOBR_RS31940 0.50 -2.1
532,164 + AZOBR_RS31940 0.50 +0.1
532,164 + AZOBR_RS31940 0.50 -2.5
532,164 + AZOBR_RS31940 0.50 +0.2
532,164 + AZOBR_RS31940 0.50 +0.5
532,164 + AZOBR_RS31940 0.50 +0.1
532,164 + AZOBR_RS31940 0.50 +0.4
532,164 + AZOBR_RS31940 0.50 +0.5
532,164 + AZOBR_RS31940 0.50 -3.2
532,164 + AZOBR_RS31940 0.50 +1.6
532,165 - AZOBR_RS31940 0.50 +1.7
532,165 - AZOBR_RS31940 0.50 +0.2
532,165 - AZOBR_RS31940 0.50 +0.9
532,165 - AZOBR_RS31940 0.50 -0.8
532,239 + AZOBR_RS31940 0.55 +1.1
532,239 + AZOBR_RS31940 0.55 -2.6
532,240 - AZOBR_RS31940 0.55 +0.0
532,240 - AZOBR_RS31940 0.55 +0.8
532,240 - AZOBR_RS31940 0.55 +0.2
532,243 - AZOBR_RS31940 0.55 +0.3
532,243 - AZOBR_RS31940 0.55 +0.8
532,243 - AZOBR_RS31940 0.55 +0.4
532,243 - AZOBR_RS31940 0.55 +0.6
532,243 - AZOBR_RS31940 0.55 +0.5
532,461 + AZOBR_RS31940 0.68 +0.2
532,461 + AZOBR_RS31940 0.68 -0.0
532,462 - AZOBR_RS31940 0.68 +0.4
532,479 + AZOBR_RS31940 0.69 -0.7
532,479 + AZOBR_RS31940 0.69 -0.5
532,479 + AZOBR_RS31940 0.69 -0.1
532,479 + AZOBR_RS31940 0.69 -2.8
532,479 + AZOBR_RS31940 0.69 +0.1
532,479 + AZOBR_RS31940 0.69 -0.2
532,479 + AZOBR_RS31940 0.69 -1.5
532,479 + AZOBR_RS31940 0.69 +1.8
532,479 + AZOBR_RS31940 0.69 -1.7
532,479 + AZOBR_RS31940 0.69 +0.4
532,479 + AZOBR_RS31940 0.69 -0.1
532,480 - AZOBR_RS31940 0.69 -0.3
532,480 - AZOBR_RS31940 0.69 -1.2
532,480 - AZOBR_RS31940 0.69 -0.2
532,480 - AZOBR_RS31940 0.69 -0.4
532,480 - AZOBR_RS31940 0.69 -0.7
532,480 - AZOBR_RS31940 0.69 -0.8
532,765 - AZOBR_RS31940 0.86 -2.5
532,765 - AZOBR_RS31940 0.86 +0.5
532,782 + AZOBR_RS31940 0.87 +1.8
532,782 + AZOBR_RS31940 0.87 -2.1
532,782 + AZOBR_RS31940 0.87 +0.4
532,782 + AZOBR_RS31940 0.87 -0.9
532,782 + AZOBR_RS31940 0.87 +1.3
532,783 - AZOBR_RS31940 0.87 +0.4
532,851 + +0.0
532,852 - -0.0
533,087 + -0.8
533,153 + +0.9
533,154 - -0.1
533,154 - +1.3
533,158 + -0.5
533,169 + -1.8
533,169 + +1.4
533,170 - +0.8
533,170 - -0.2
533,170 - +0.3
533,308 - +0.3
533,442 + AZOBR_RS31945 0.16 +0.1
533,442 + AZOBR_RS31945 0.16 +0.5
533,442 + AZOBR_RS31945 0.16 -0.6
533,443 - AZOBR_RS31945 0.16 +2.2
533,443 - AZOBR_RS31945 0.16 -3.8
533,443 - AZOBR_RS31945 0.16 -1.9
533,443 - AZOBR_RS31945 0.16 -0.2
533,443 - AZOBR_RS31945 0.16 -1.3
533,443 - AZOBR_RS31945 0.16 +0.1
533,443 - AZOBR_RS31945 0.16 -1.0
533,488 - AZOBR_RS31945 0.18 -0.5
533,488 - AZOBR_RS31945 0.18 -1.0

Or see this region's nucleotide sequence