Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31255 and AZOBR_RS31260 are separated by 111 nucleotides AZOBR_RS31260 and AZOBR_RS31265 are separated by 17 nucleotides
AZOBR_RS31255: AZOBR_RS31255 - galactose 1-dehydrogenase, at 377,161 to 378,138
_RS31255
AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076
_RS31260
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.923 kb on - strand, within AZOBR_RS31255 at 378.004 kb on + strand, within AZOBR_RS31255 at 378.004 kb on + strand, within AZOBR_RS31255 at 378.016 kb on + strand, within AZOBR_RS31255 at 378.017 kb on - strand, within AZOBR_RS31255 at 378.136 kb on + strand at 378.136 kb on + strand at 378.359 kb on - strand at 378.359 kb on - strand at 378.359 kb on - strand at 378.371 kb on - strand at 378.994 kb on + strand, within AZOBR_RS31260 at 378.995 kb on - strand, within AZOBR_RS31260 at 378.995 kb on - strand, within AZOBR_RS31260 at 379.234 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.573 kb on + strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.616 kb on - strand, within AZOBR_RS31260 at 380.029 kb on + strand at 380.030 kb on - strand at 380.350 kb on + strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.783 kb on - strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 381.040 kb on + strand, within AZOBR_RS31265
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 377,923 - AZOBR_RS31255 0.78 -2.5 378,004 + AZOBR_RS31255 0.86 -1.8 378,004 + AZOBR_RS31255 0.86 -0.6 378,016 + AZOBR_RS31255 0.87 -2.7 378,017 - AZOBR_RS31255 0.88 -0.1 378,136 + -0.8 378,136 + +1.4 378,359 - -1.9 378,359 - -1.5 378,359 - -0.9 378,371 - +0.4 378,994 + AZOBR_RS31260 0.41 -0.5 378,995 - AZOBR_RS31260 0.41 +0.1 378,995 - AZOBR_RS31260 0.41 +0.3 379,234 + AZOBR_RS31260 0.54 +0.6 379,504 + AZOBR_RS31260 0.69 -0.1 379,504 + AZOBR_RS31260 0.69 -1.4 379,505 - AZOBR_RS31260 0.69 +0.2 379,505 - AZOBR_RS31260 0.69 -0.7 379,505 - AZOBR_RS31260 0.69 +0.7 379,505 - AZOBR_RS31260 0.69 +1.5 379,573 + AZOBR_RS31260 0.72 -0.7 379,574 - AZOBR_RS31260 0.72 -2.1 379,574 - AZOBR_RS31260 0.72 +1.0 379,615 + AZOBR_RS31260 0.75 -0.2 379,615 + AZOBR_RS31260 0.75 -0.4 379,615 + AZOBR_RS31260 0.75 -0.7 379,616 - AZOBR_RS31260 0.75 -0.1 380,029 + +2.8 380,030 - -2.8 380,350 + AZOBR_RS31265 0.21 -0.0 380,351 - AZOBR_RS31265 0.21 +0.6 380,351 - AZOBR_RS31265 0.21 +0.1 380,738 - AZOBR_RS31265 0.53 -2.3 380,738 - AZOBR_RS31265 0.53 +0.5 380,783 - AZOBR_RS31265 0.56 -0.1 380,818 + AZOBR_RS31265 0.59 +0.5 380,818 + AZOBR_RS31265 0.59 +0.3 380,818 + AZOBR_RS31265 0.59 +0.5 380,818 + AZOBR_RS31265 0.59 +1.3 380,818 + AZOBR_RS31265 0.59 -0.6 380,819 - AZOBR_RS31265 0.59 -0.1 380,819 - AZOBR_RS31265 0.59 +0.2 380,819 - AZOBR_RS31265 0.59 +0.1 381,040 + AZOBR_RS31265 0.77 +0.5
Or see this region's nucleotide sequence