Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31110

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31105 and AZOBR_RS31110 are separated by 11 nucleotides AZOBR_RS31105: AZOBR_RS31105 - 8-amino-7-oxononanoate synthase, at 342,434 to 343,615 _RS31105 AZOBR_RS31110: AZOBR_RS31110 - hypothetical protein, at 343,627 to 344,415 _RS31110 Position (kb) 343 344 345Strain fitness (log2 ratio) -1 0 1at 343.188 kb on - strand, within AZOBR_RS31105at 343.188 kb on - strand, within AZOBR_RS31105at 343.218 kb on - strand, within AZOBR_RS31105at 343.218 kb on - strand, within AZOBR_RS31105at 344.267 kb on + strand, within AZOBR_RS31110at 344.473 kb on - strandat 344.929 kb on + strandat 344.929 kb on + strandat 345.163 kb on + strandat 345.280 kb on + strandat 345.281 kb on - strandat 345.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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343,188 - AZOBR_RS31105 0.64 +1.5
343,188 - AZOBR_RS31105 0.64 +0.6
343,218 - AZOBR_RS31105 0.66 -0.1
343,218 - AZOBR_RS31105 0.66 -0.2
344,267 + AZOBR_RS31110 0.81 -0.9
344,473 - -0.5
344,929 + +0.7
344,929 + +0.0
345,163 + -0.5
345,280 + +0.1
345,281 - -0.0
345,383 - +0.7

Or see this region's nucleotide sequence