Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30540

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30535 and AZOBR_RS30540 are separated by 536 nucleotides AZOBR_RS30535: AZOBR_RS30535 - tRNA-Met, at 200,147 to 200,223 _RS30535 AZOBR_RS30540: AZOBR_RS30540 - hypothetical protein, at 200,760 to 201,452 _RS30540 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 200.402 kb on + strandat 200.550 kb on + strandat 200.551 kb on - strandat 200.841 kb on + strand, within AZOBR_RS30540at 200.841 kb on + strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.861 kb on - strand, within AZOBR_RS30540at 200.861 kb on - strand, within AZOBR_RS30540at 201.031 kb on + strand, within AZOBR_RS30540at 201.032 kb on - strand, within AZOBR_RS30540at 201.032 kb on - strand, within AZOBR_RS30540at 202.282 kb on + strandat 202.333 kb on + strandat 202.333 kb on + strandat 202.334 kb on - strandat 202.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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200,402 + -0.2
200,550 + -0.9
200,551 - -0.2
200,841 + AZOBR_RS30540 0.12 +0.2
200,841 + AZOBR_RS30540 0.12 +0.9
200,842 - AZOBR_RS30540 0.12 -1.9
200,842 - AZOBR_RS30540 0.12 -0.0
200,842 - AZOBR_RS30540 0.12 +0.0
200,842 - AZOBR_RS30540 0.12 +0.0
200,860 + AZOBR_RS30540 0.14 +0.5
200,860 + AZOBR_RS30540 0.14 -1.6
200,860 + AZOBR_RS30540 0.14 -0.8
200,861 - AZOBR_RS30540 0.15 -0.2
200,861 - AZOBR_RS30540 0.15 +0.4
201,031 + AZOBR_RS30540 0.39 -2.9
201,032 - AZOBR_RS30540 0.39 -0.2
201,032 - AZOBR_RS30540 0.39 +2.6
202,282 + -0.4
202,333 + -1.5
202,333 + +0.2
202,334 - +0.3
202,334 - +1.2

Or see this region's nucleotide sequence