Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30160

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30155 and AZOBR_RS30160 are separated by 501 nucleotidesAZOBR_RS30160 and AZOBR_RS30165 are separated by 30 nucleotides AZOBR_RS30155: AZOBR_RS30155 - pyruvate kinase, at 104,061 to 105,494 _RS30155 AZOBR_RS30160: AZOBR_RS30160 - chemotaxis protein CheY, at 105,996 to 108,557 _RS30160 AZOBR_RS30165: AZOBR_RS30165 - hypothetical protein, at 108,588 to 109,730 _RS30165 Position (kb) 105 106 107 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 105.557 kb on + strandat 105.861 kb on + strandat 105.995 kb on + strandat 106.489 kb on - strand, within AZOBR_RS30160at 106.489 kb on - strand, within AZOBR_RS30160at 106.489 kb on - strand, within AZOBR_RS30160at 106.554 kb on + strand, within AZOBR_RS30160at 106.554 kb on + strand, within AZOBR_RS30160at 106.555 kb on - strand, within AZOBR_RS30160at 106.555 kb on - strand, within AZOBR_RS30160at 106.555 kb on - strand, within AZOBR_RS30160at 106.608 kb on + strand, within AZOBR_RS30160at 106.608 kb on + strand, within AZOBR_RS30160at 106.609 kb on - strand, within AZOBR_RS30160at 106.609 kb on - strand, within AZOBR_RS30160at 106.746 kb on + strand, within AZOBR_RS30160at 106.881 kb on + strand, within AZOBR_RS30160at 106.881 kb on + strand, within AZOBR_RS30160at 106.939 kb on - strand, within AZOBR_RS30160at 106.939 kb on - strand, within AZOBR_RS30160at 107.044 kb on - strand, within AZOBR_RS30160at 107.271 kb on + strand, within AZOBR_RS30160at 107.271 kb on + strand, within AZOBR_RS30160at 107.271 kb on + strand, within AZOBR_RS30160at 107.271 kb on + strand, within AZOBR_RS30160at 107.271 kb on + strand, within AZOBR_RS30160at 107.272 kb on - strand, within AZOBR_RS30160at 107.272 kb on - strand, within AZOBR_RS30160at 107.874 kb on + strand, within AZOBR_RS30160at 108.063 kb on + strand, within AZOBR_RS30160at 108.063 kb on + strand, within AZOBR_RS30160at 108.063 kb on + strandat 108.063 kb on + strand, within AZOBR_RS30160at 108.064 kb on - strand, within AZOBR_RS30160at 108.886 kb on + strand, within AZOBR_RS30165at 108.887 kb on - strand, within AZOBR_RS30165at 108.887 kb on - strand, within AZOBR_RS30165at 109.166 kb on - strand, within AZOBR_RS30165at 109.289 kb on - strand, within AZOBR_RS30165at 109.414 kb on + strand, within AZOBR_RS30165at 109.414 kb on + strand, within AZOBR_RS30165at 109.415 kb on - strand, within AZOBR_RS30165at 109.415 kb on - strand, within AZOBR_RS30165

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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105,557 + +0.2
105,861 + +0.1
105,995 + +0.3
106,489 - AZOBR_RS30160 0.19 +0.6
106,489 - AZOBR_RS30160 0.19 -0.9
106,489 - AZOBR_RS30160 0.19 +0.9
106,554 + AZOBR_RS30160 0.22 -2.2
106,554 + AZOBR_RS30160 0.22 +1.3
106,555 - AZOBR_RS30160 0.22 -0.5
106,555 - AZOBR_RS30160 0.22 +1.1
106,555 - AZOBR_RS30160 0.22 -0.0
106,608 + AZOBR_RS30160 0.24 +0.4
106,608 + AZOBR_RS30160 0.24 -0.1
106,609 - AZOBR_RS30160 0.24 -0.1
106,609 - AZOBR_RS30160 0.24 +0.3
106,746 + AZOBR_RS30160 0.29 +0.5
106,881 + AZOBR_RS30160 0.35 +0.3
106,881 + AZOBR_RS30160 0.35 -3.8
106,939 - AZOBR_RS30160 0.37 -0.6
106,939 - AZOBR_RS30160 0.37 -0.4
107,044 - AZOBR_RS30160 0.41 -3.2
107,271 + AZOBR_RS30160 0.50 -1.2
107,271 + AZOBR_RS30160 0.50 +0.6
107,271 + AZOBR_RS30160 0.50 -0.5
107,271 + AZOBR_RS30160 0.50 -3.4
107,271 + AZOBR_RS30160 0.50 +0.5
107,272 - AZOBR_RS30160 0.50 +0.2
107,272 - AZOBR_RS30160 0.50 -0.1
107,874 + AZOBR_RS30160 0.73 -0.6
108,063 + AZOBR_RS30160 0.81 -2.1
108,063 + AZOBR_RS30160 0.81 -0.2
108,063 + -0.5
108,063 + AZOBR_RS30160 0.81 -0.5
108,064 - AZOBR_RS30160 0.81 -1.3
108,886 + AZOBR_RS30165 0.26 -3.6
108,887 - AZOBR_RS30165 0.26 -0.5
108,887 - AZOBR_RS30165 0.26 -1.1
109,166 - AZOBR_RS30165 0.51 -0.1
109,289 - AZOBR_RS30165 0.61 +0.3
109,414 + AZOBR_RS30165 0.72 -1.6
109,414 + AZOBR_RS30165 0.72 +1.9
109,415 - AZOBR_RS30165 0.72 -3.0
109,415 - AZOBR_RS30165 0.72 -1.0

Or see this region's nucleotide sequence