Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30135

Experiment: Paraquat dichloride 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS30130 and AZOBR_RS30135 are separated by 457 nucleotidesAZOBR_RS30135 and AZOBR_RS30140 are separated by 148 nucleotides AZOBR_RS30130: AZOBR_RS30130 - C4-dicarboxylate ABC transporter, at 98,826 to 99,785 _RS30130 AZOBR_RS30135: AZOBR_RS30135 - GntR family transcriptional regulator, at 100,243 to 101,001 _RS30135 AZOBR_RS30140: AZOBR_RS30140 - multidrug transporter, at 101,150 to 102,022 _RS30140 Position (kb) 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.352 kb on + strand, within AZOBR_RS30130at 99.352 kb on + strand, within AZOBR_RS30130at 99.353 kb on - strand, within AZOBR_RS30130at 99.376 kb on + strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.819 kb on + strandat 99.820 kb on - strandat 99.943 kb on - strandat 99.985 kb on + strandat 100.169 kb on - strandat 100.295 kb on + strandat 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 100.914 kb on - strand, within AZOBR_RS30135at 101.074 kb on - strandat 101.284 kb on - strand, within AZOBR_RS30140at 101.340 kb on + strand, within AZOBR_RS30140at 101.460 kb on + strand, within AZOBR_RS30140at 101.461 kb on - strand, within AZOBR_RS30140at 101.527 kb on - strand, within AZOBR_RS30140at 101.638 kb on - strand, within AZOBR_RS30140at 101.739 kb on + strand, within AZOBR_RS30140at 101.739 kb on + strand, within AZOBR_RS30140at 101.950 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
remove
99,352 + AZOBR_RS30130 0.55 +1.5
99,352 + AZOBR_RS30130 0.55 -1.8
99,353 - AZOBR_RS30130 0.55 +0.4
99,376 + AZOBR_RS30130 0.57 -1.3
99,377 - AZOBR_RS30130 0.57 -0.9
99,377 - AZOBR_RS30130 0.57 -2.0
99,667 + AZOBR_RS30130 0.88 -0.6
99,667 + AZOBR_RS30130 0.88 -0.3
99,667 + AZOBR_RS30130 0.88 +1.2
99,667 + AZOBR_RS30130 0.88 -1.6
99,668 - AZOBR_RS30130 0.88 +0.9
99,668 - AZOBR_RS30130 0.88 +0.2
99,668 - AZOBR_RS30130 0.88 -1.9
99,819 + +0.4
99,820 - -0.0
99,943 - +0.8
99,985 + +0.0
100,169 - -0.9
100,295 + +0.3
100,745 + AZOBR_RS30135 0.66 -0.1
100,745 + AZOBR_RS30135 0.66 +1.5
100,745 + AZOBR_RS30135 0.66 -2.3
100,745 + AZOBR_RS30135 0.66 -0.5
100,745 + AZOBR_RS30135 0.66 +0.2
100,745 + AZOBR_RS30135 0.66 -0.4
100,745 + AZOBR_RS30135 0.66 +0.1
100,745 + AZOBR_RS30135 0.66 -0.7
100,746 - AZOBR_RS30135 0.66 -1.2
100,746 - AZOBR_RS30135 0.66 +0.6
100,746 - AZOBR_RS30135 0.66 -0.4
100,746 - AZOBR_RS30135 0.66 -0.1
100,746 - AZOBR_RS30135 0.66 +0.7
100,746 - AZOBR_RS30135 0.66 +0.2
100,746 - AZOBR_RS30135 0.66 +0.2
100,746 - AZOBR_RS30135 0.66 +0.3
100,746 - AZOBR_RS30135 0.66 -0.3
100,746 - AZOBR_RS30135 0.66 +0.0
100,746 - AZOBR_RS30135 0.66 +0.5
100,914 - AZOBR_RS30135 0.88 +1.6
100,914 - AZOBR_RS30135 0.88 -0.6
100,914 - AZOBR_RS30135 0.88 -1.9
101,074 - -1.5
101,284 - AZOBR_RS30140 0.15 -0.5
101,340 + AZOBR_RS30140 0.22 +1.2
101,460 + AZOBR_RS30140 0.36 +0.2
101,461 - AZOBR_RS30140 0.36 -3.1
101,527 - AZOBR_RS30140 0.43 +1.1
101,638 - AZOBR_RS30140 0.56 +1.1
101,739 + AZOBR_RS30140 0.67 +0.2
101,739 + AZOBR_RS30140 0.67 -0.1
101,950 - +1.9

Or see this region's nucleotide sequence