Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29845 and AZOBR_RS29850 are separated by 5 nucleotides AZOBR_RS29850 and AZOBR_RS29855 overlap by 4 nucleotides AZOBR_RS29855 and AZOBR_RS29860 are separated by 4 nucleotides
AZOBR_RS29845: AZOBR_RS29845 - oxidoreductase, at 43,080 to 44,108
_RS29845
AZOBR_RS29850: AZOBR_RS29850 - ketohydroxyglutarate aldolase, at 44,114 to 44,749
_RS29850
AZOBR_RS29855: AZOBR_RS29855 - GntR family transcriptional regulator, at 44,746 to 45,513
_RS29855
AZOBR_RS29860: AZOBR_RS29860 - ketodeoxygluconokinase, at 45,518 to 46,450
_RS29860
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.115 kb on + strand at 44.115 kb on + strand at 44.425 kb on - strand, within AZOBR_RS29850 at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand at 45.474 kb on + strand at 45.475 kb on - strand at 45.475 kb on - strand at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.056 kb on + strand, within AZOBR_RS29860 at 46.057 kb on - strand, within AZOBR_RS29860 at 46.057 kb on - strand, within AZOBR_RS29860 at 46.057 kb on - strand, within AZOBR_RS29860 at 46.057 kb on - strand, within AZOBR_RS29860 at 46.057 kb on - strand, within AZOBR_RS29860 at 46.068 kb on + strand, within AZOBR_RS29860 at 46.068 kb on + strand, within AZOBR_RS29860 at 46.146 kb on + strand, within AZOBR_RS29860 at 46.147 kb on - strand, within AZOBR_RS29860 at 46.188 kb on + strand, within AZOBR_RS29860 at 46.188 kb on + strand, within AZOBR_RS29860 at 46.188 kb on + strand, within AZOBR_RS29860 at 46.188 kb on + strand, within AZOBR_RS29860 at 46.189 kb on - strand, within AZOBR_RS29860 at 46.303 kb on - strand, within AZOBR_RS29860 at 46.313 kb on + strand, within AZOBR_RS29860 at 46.314 kb on - strand, within AZOBR_RS29860 at 46.314 kb on - strand, within AZOBR_RS29860 at 46.330 kb on + strand, within AZOBR_RS29860 at 46.332 kb on + strand, within AZOBR_RS29860 at 46.332 kb on + strand, within AZOBR_RS29860 at 46.332 kb on + strand, within AZOBR_RS29860 at 46.332 kb on + strand, within AZOBR_RS29860 at 46.333 kb on - strand, within AZOBR_RS29860 at 46.333 kb on - strand, within AZOBR_RS29860 at 46.333 kb on - strand, within AZOBR_RS29860 at 46.333 kb on - strand, within AZOBR_RS29860
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 44,115 + -0.2 44,115 + -0.1 44,425 - AZOBR_RS29850 0.49 +1.1 44,774 + -0.1 44,774 + +1.1 44,774 + -3.1 44,775 - -0.4 44,775 - +0.5 44,775 - -0.0 44,775 - -0.2 45,474 + -0.4 45,475 - +0.9 45,475 - +1.9 46,056 + AZOBR_RS29860 0.58 -1.2 46,056 + AZOBR_RS29860 0.58 -0.5 46,056 + AZOBR_RS29860 0.58 +1.3 46,056 + AZOBR_RS29860 0.58 +0.2 46,056 + AZOBR_RS29860 0.58 -0.6 46,056 + AZOBR_RS29860 0.58 -1.5 46,056 + AZOBR_RS29860 0.58 -0.2 46,056 + AZOBR_RS29860 0.58 -1.7 46,056 + AZOBR_RS29860 0.58 -2.5 46,056 + AZOBR_RS29860 0.58 -0.1 46,056 + AZOBR_RS29860 0.58 -0.5 46,057 - AZOBR_RS29860 0.58 -0.7 46,057 - AZOBR_RS29860 0.58 -0.3 46,057 - AZOBR_RS29860 0.58 -0.6 46,057 - AZOBR_RS29860 0.58 -0.5 46,057 - AZOBR_RS29860 0.58 -1.0 46,068 + AZOBR_RS29860 0.59 -0.5 46,068 + AZOBR_RS29860 0.59 -0.9 46,146 + AZOBR_RS29860 0.67 -0.3 46,147 - AZOBR_RS29860 0.67 +0.1 46,188 + AZOBR_RS29860 0.72 +0.0 46,188 + AZOBR_RS29860 0.72 -0.2 46,188 + AZOBR_RS29860 0.72 -1.6 46,188 + AZOBR_RS29860 0.72 -0.1 46,189 - AZOBR_RS29860 0.72 -0.4 46,303 - AZOBR_RS29860 0.84 +0.5 46,313 + AZOBR_RS29860 0.85 +0.1 46,314 - AZOBR_RS29860 0.85 -0.3 46,314 - AZOBR_RS29860 0.85 -0.8 46,330 + AZOBR_RS29860 0.87 -0.1 46,332 + AZOBR_RS29860 0.87 -1.4 46,332 + AZOBR_RS29860 0.87 -1.2 46,332 + AZOBR_RS29860 0.87 -0.6 46,332 + AZOBR_RS29860 0.87 -1.9 46,333 - AZOBR_RS29860 0.87 +1.0 46,333 - AZOBR_RS29860 0.87 -0.6 46,333 - AZOBR_RS29860 0.87 -0.2 46,333 - AZOBR_RS29860 0.87 -0.3
Or see this region's nucleotide sequence